Variant report

Variant	rs11023616
Chromosome Location	chr11:15546471-15546472
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11023574	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11023575	1.00[AMR][1000 genomes]
rs11023586	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11023587	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11023601	1.00[AMR][1000 genomes]
rs11023627	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12274262	1.00[AMR][1000 genomes]
rs12278712	1.00[AMR][1000 genomes]
rs12278808	1.00[AMR][1000 genomes]
rs12282417	1.00[AMR][1000 genomes]
rs12287139	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12287997	1.00[AMR][1000 genomes]
rs12291052	1.00[AMR][1000 genomes]
rs12291841	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16914840	1.00[AMR][1000 genomes]
rs28531732	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7111701	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11023616	AHSP	trans	lymphoblastoid	seeQTL

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15544400-15547200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr11:15545000-15547400	Enhancers	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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