Variant report

Variant	rs16914840
Chromosome Location	chr11:15524229-15524230
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11023574	1.00[AMR][1000 genomes]
rs11023575	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11023586	1.00[AMR][1000 genomes]
rs11023587	1.00[AMR][1000 genomes]
rs11023601	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11023616	1.00[AMR][1000 genomes]
rs11023627	1.00[AMR][1000 genomes]
rs12274262	1.00[AMR][1000 genomes]
rs12278712	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12278808	1.00[AMR][1000 genomes]
rs12282417	1.00[AMR][1000 genomes]
rs12287139	1.00[AMR][1000 genomes]
rs12287997	1.00[AMR][1000 genomes]
rs12291052	1.00[AMR][1000 genomes]
rs12291841	1.00[AMR][1000 genomes]
rs28531732	1.00[AMR][1000 genomes]
rs7111701	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1809270	chr11:15504338-15528140	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv17382	chr11:15523863-15525293	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv14603	chr11:15524070-15524712	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15522400-15524800	Weak transcription	Fetal Intestine Small	intestine
2	chr11:15522800-15525200	Weak transcription	Placenta	Placenta
3	chr11:15524000-15524400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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