Variant report

Variant	rs12291841
Chromosome Location	chr11:15508528-15508529
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11023574	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11023575	1.00[AMR][1000 genomes]
rs11023586	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11023587	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11023601	1.00[AMR][1000 genomes]
rs11023616	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11023627	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12274262	1.00[AMR][1000 genomes]
rs12278712	1.00[AMR][1000 genomes]
rs12278808	1.00[AMR][1000 genomes]
rs12282417	1.00[AMR][1000 genomes]
rs12287139	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12287997	1.00[AMR][1000 genomes]
rs12291052	1.00[AMR][1000 genomes]
rs16914840	1.00[AMR][1000 genomes]
rs28531732	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7111701	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1809270	chr11:15504338-15528140	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15506600-15510600	Weak transcription	Fetal Intestine Large	intestine
2	chr11:15507600-15508800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr11:15507600-15514800	Weak transcription	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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