Variant report

Variant	rs11023755
Chromosome Location	chr11:15893364-15893365
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11023752	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs7118162	0.89[AMR][1000 genomes]
rs7122685	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832073	chr11:15822409-15984078	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15890400-15897000	Weak transcription	Fetal Intestine Small	intestine
2	chr11:15891800-15894600	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr11:15892000-15894000	Enhancers	Brain Germinal Matrix	brain
4	chr11:15892000-15894800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr11:15892200-15893800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr11:15892200-15893800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr11:15892400-15894200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr11:15892400-15894400	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr11:15892600-15893800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr11:15892600-15894000	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr11:15892600-15894400	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr11:15892600-15894600	Enhancers	H1 Cell Line	embryonic stem cell
13	chr11:15892800-15894000	Enhancers	H9 Cell Line	embryonic stem cell
14	chr11:15892800-15894400	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr11:15893000-15894200	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr11:15893000-15896000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr11:15893200-15894000	Enhancers	iPS-15b Cell Line	embryonic stem cell
18	chr11:15893200-15895800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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