Variant report

Variant	rs11023752
Chromosome Location	chr11:15891161-15891162
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs10500821	1.00[TSI][hapmap]
rs10500822	1.00[TSI][hapmap]
rs1074953	1.00[EUR][1000 genomes]
rs11023755	0.86[YRI][hapmap];0.86[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs12099171	1.00[EUR][1000 genomes]
rs12574859	1.00[TSI][hapmap]
rs12574862	1.00[TSI][hapmap]
rs12577378	1.00[TSI][hapmap]
rs12577495	1.00[TSI][hapmap]
rs16932405	1.00[TSI][hapmap]
rs16932409	1.00[TSI][hapmap]
rs16932416	1.00[TSI][hapmap]
rs16932455	1.00[TSI][hapmap]
rs16932458	1.00[TSI][hapmap]
rs16932474	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs16932477	1.00[EUR][1000 genomes]
rs16932507	1.00[EUR][1000 genomes]
rs16932558	1.00[EUR][1000 genomes]
rs4279976	1.00[TSI][hapmap]
rs4478958	1.00[TSI][hapmap]
rs55776402	1.00[EUR][1000 genomes]
rs55836990	1.00[EUR][1000 genomes]
rs56003030	1.00[EUR][1000 genomes]
rs56013327	1.00[EUR][1000 genomes]
rs56039367	1.00[EUR][1000 genomes]
rs56214661	1.00[EUR][1000 genomes]
rs56336701	1.00[EUR][1000 genomes]
rs56339948	1.00[EUR][1000 genomes]
rs56395489	1.00[EUR][1000 genomes]
rs56710873	1.00[EUR][1000 genomes]
rs57059428	1.00[EUR][1000 genomes]
rs57594599	1.00[EUR][1000 genomes]
rs58248240	1.00[EUR][1000 genomes]
rs58385655	1.00[EUR][1000 genomes]
rs58476737	1.00[EUR][1000 genomes]
rs59156755	1.00[EUR][1000 genomes]
rs59237138	1.00[EUR][1000 genomes]
rs59355840	1.00[EUR][1000 genomes]
rs59749270	1.00[EUR][1000 genomes]
rs60041887	1.00[EUR][1000 genomes]
rs60082792	1.00[EUR][1000 genomes]
rs60693734	1.00[EUR][1000 genomes]
rs60695570	1.00[EUR][1000 genomes]
rs60855295	1.00[EUR][1000 genomes]
rs60900176	1.00[EUR][1000 genomes]
rs60968744	1.00[EUR][1000 genomes]
rs61000891	1.00[EUR][1000 genomes]
rs61145028	1.00[EUR][1000 genomes]
rs61292713	1.00[EUR][1000 genomes]
rs61573169	1.00[EUR][1000 genomes]
rs7101975	1.00[EUR][1000 genomes]
rs7103044	1.00[EUR][1000 genomes]
rs7103298	1.00[EUR][1000 genomes]
rs7105445	1.00[EUR][1000 genomes]
rs7114742	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs7118162	1.00[AMR][1000 genomes]
rs7118842	1.00[EUR][1000 genomes]
rs7120852	1.00[EUR][1000 genomes]
rs7122685	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs7126907	1.00[EUR][1000 genomes]
rs7128209	1.00[EUR][1000 genomes]
rs7128216	1.00[EUR][1000 genomes]
rs7128226	1.00[EUR][1000 genomes]
rs7128933	1.00[EUR][1000 genomes]
rs73417010	1.00[EUR][1000 genomes]
rs73417011	1.00[EUR][1000 genomes]
rs73417012	1.00[EUR][1000 genomes]
rs73417015	1.00[EUR][1000 genomes]
rs7926258	1.00[EUR][1000 genomes]
rs7933131	1.00[EUR][1000 genomes]
rs7942659	1.00[TSI][hapmap]
rs894006	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832073	chr11:15822409-15984078	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15886800-15892600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr11:15887400-15892600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr11:15887400-15892800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr11:15887600-15892000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr11:15890400-15897000	Weak transcription	Fetal Intestine Small	intestine

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