Variant report

Variant	rs58476737
Chromosome Location	chr11:16014696-16014697
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:16013877..16016784-chr11:16017311..16019935,2	MCF-7	breast:

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs1074953	1.00[EUR][1000 genomes]
rs11023752	1.00[EUR][1000 genomes]
rs12099171	1.00[EUR][1000 genomes]
rs16932474	1.00[EUR][1000 genomes]
rs16932477	1.00[EUR][1000 genomes]
rs16932507	1.00[EUR][1000 genomes]
rs16932558	1.00[EUR][1000 genomes]
rs55776402	1.00[EUR][1000 genomes]
rs55797092	1.00[EUR][1000 genomes]
rs55836990	1.00[EUR][1000 genomes]
rs56003030	1.00[EUR][1000 genomes]
rs56013327	1.00[EUR][1000 genomes]
rs56039367	1.00[EUR][1000 genomes]
rs56077417	1.00[EUR][1000 genomes]
rs56110890	1.00[EUR][1000 genomes]
rs56214661	1.00[EUR][1000 genomes]
rs56336701	1.00[EUR][1000 genomes]
rs56339948	1.00[EUR][1000 genomes]
rs56395489	1.00[EUR][1000 genomes]
rs56710873	1.00[EUR][1000 genomes]
rs57058857	1.00[EUR][1000 genomes]
rs57059428	1.00[EUR][1000 genomes]
rs57534454	1.00[EUR][1000 genomes]
rs57594599	1.00[EUR][1000 genomes]
rs58248240	1.00[EUR][1000 genomes]
rs58385655	1.00[EUR][1000 genomes]
rs59156755	1.00[EUR][1000 genomes]
rs59237138	1.00[EUR][1000 genomes]
rs59275453	1.00[EUR][1000 genomes]
rs59355840	1.00[EUR][1000 genomes]
rs59732810	1.00[EUR][1000 genomes]
rs59749270	1.00[EUR][1000 genomes]
rs60041887	1.00[EUR][1000 genomes]
rs60082792	1.00[EUR][1000 genomes]
rs60488672	1.00[EUR][1000 genomes]
rs60693734	1.00[EUR][1000 genomes]
rs60695570	1.00[EUR][1000 genomes]
rs60855295	1.00[EUR][1000 genomes]
rs60900176	1.00[EUR][1000 genomes]
rs60968744	1.00[EUR][1000 genomes]
rs61000891	1.00[EUR][1000 genomes]
rs61145028	1.00[EUR][1000 genomes]
rs61292713	1.00[EUR][1000 genomes]
rs61560681	1.00[EUR][1000 genomes]
rs61573169	1.00[EUR][1000 genomes]
rs6486273	1.00[EUR][1000 genomes]
rs7101975	1.00[EUR][1000 genomes]
rs7103044	1.00[EUR][1000 genomes]
rs7103298	1.00[EUR][1000 genomes]
rs7105445	1.00[EUR][1000 genomes]
rs7114742	1.00[EUR][1000 genomes]
rs7118842	1.00[EUR][1000 genomes]
rs7120852	1.00[EUR][1000 genomes]
rs7122351	1.00[EUR][1000 genomes]
rs7126907	1.00[EUR][1000 genomes]
rs7128209	1.00[EUR][1000 genomes]
rs7128216	1.00[EUR][1000 genomes]
rs7128226	1.00[EUR][1000 genomes]
rs7128933	1.00[EUR][1000 genomes]
rs7130519	1.00[EUR][1000 genomes]
rs7130995	1.00[EUR][1000 genomes]
rs73417010	1.00[EUR][1000 genomes]
rs73417011	1.00[EUR][1000 genomes]
rs73417012	1.00[EUR][1000 genomes]
rs73417015	1.00[EUR][1000 genomes]
rs7926258	1.00[EUR][1000 genomes]
rs7933131	1.00[EUR][1000 genomes]
rs7936618	1.00[EUR][1000 genomes]
rs7949999	1.00[EUR][1000 genomes]
rs894006	1.00[EUR][1000 genomes]
rs9666192	1.00[EUR][1000 genomes]
rs9667689	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832074	chr11:15927105-16100772	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15999400-16022800	Weak transcription	K562	blood
2	chr11:16004800-16024600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr11:16007800-16023000	Weak transcription	Duodenum Mucosa	Duodenum
4	chr11:16008000-16022800	Weak transcription	Fetal Intestine Small	intestine
5	chr11:16010600-16015000	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr11:16010800-16015000	Weak transcription	Psoas Muscle	Psoas
7	chr11:16010800-16021600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr11:16010800-16022800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr11:16010800-16022800	Weak transcription	Fetal Intestine Large	intestine
10	chr11:16011000-16015000	Weak transcription	Fetal Muscle Leg	muscle
11	chr11:16011000-16019200	Weak transcription	Right Atrium	heart
12	chr11:16011000-16033800	Weak transcription	Left Ventricle	heart
13	chr11:16011200-16021400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr11:16011400-16023000	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr11:16013600-16015000	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr11:16013600-16020200	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr11:16013800-16016000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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