Variant report

Variant	rs894006
Chromosome Location	chr11:15924743-15924744
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:15919975..15921591-chr11:15922021..15924806,2	K562	blood:
2	chr11:15924300..15926457-chr11:15932975..15935932,2	K562	blood:
3	chr11:15919105..15920647-chr11:15923834..15925463,2	MCF-7	breast:

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs10500821	1.00[TSI][hapmap]
rs10500822	1.00[TSI][hapmap]
rs1074953	1.00[EUR][1000 genomes]
rs11023752	1.00[EUR][1000 genomes]
rs12099171	1.00[EUR][1000 genomes]
rs12574859	1.00[TSI][hapmap]
rs12574862	1.00[TSI][hapmap]
rs12577378	1.00[TSI][hapmap]
rs12577495	1.00[TSI][hapmap]
rs16932405	1.00[TSI][hapmap]
rs16932409	1.00[TSI][hapmap]
rs16932416	1.00[TSI][hapmap]
rs16932455	1.00[TSI][hapmap]
rs16932458	1.00[TSI][hapmap]
rs16932474	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs16932477	1.00[EUR][1000 genomes]
rs16932507	1.00[EUR][1000 genomes]
rs16932558	1.00[EUR][1000 genomes]
rs4279976	1.00[TSI][hapmap]
rs4478958	1.00[TSI][hapmap]
rs55776402	1.00[EUR][1000 genomes]
rs55797092	1.00[EUR][1000 genomes]
rs55836990	1.00[EUR][1000 genomes]
rs56003030	1.00[EUR][1000 genomes]
rs56013327	1.00[EUR][1000 genomes]
rs56039367	1.00[EUR][1000 genomes]
rs56077417	1.00[EUR][1000 genomes]
rs56214661	1.00[EUR][1000 genomes]
rs56336701	1.00[EUR][1000 genomes]
rs56339948	1.00[EUR][1000 genomes]
rs56395489	1.00[EUR][1000 genomes]
rs56710873	1.00[EUR][1000 genomes]
rs57058857	1.00[EUR][1000 genomes]
rs57059428	1.00[EUR][1000 genomes]
rs57594599	1.00[EUR][1000 genomes]
rs58248240	1.00[EUR][1000 genomes]
rs58385655	1.00[EUR][1000 genomes]
rs58476737	1.00[EUR][1000 genomes]
rs59156755	1.00[EUR][1000 genomes]
rs59237138	1.00[EUR][1000 genomes]
rs59275453	1.00[EUR][1000 genomes]
rs59355840	1.00[EUR][1000 genomes]
rs59749270	1.00[EUR][1000 genomes]
rs60041887	1.00[EUR][1000 genomes]
rs60082792	1.00[EUR][1000 genomes]
rs60488672	1.00[EUR][1000 genomes]
rs60693734	1.00[EUR][1000 genomes]
rs60695570	1.00[EUR][1000 genomes]
rs60855295	1.00[EUR][1000 genomes]
rs60900176	1.00[EUR][1000 genomes]
rs60968744	1.00[EUR][1000 genomes]
rs61000891	1.00[EUR][1000 genomes]
rs61145028	1.00[EUR][1000 genomes]
rs61292713	1.00[EUR][1000 genomes]
rs61573169	1.00[EUR][1000 genomes]
rs6486273	1.00[EUR][1000 genomes]
rs7101975	1.00[EUR][1000 genomes]
rs7103044	1.00[EUR][1000 genomes]
rs7103298	1.00[EUR][1000 genomes]
rs7105445	1.00[EUR][1000 genomes]
rs7114742	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs7118842	1.00[EUR][1000 genomes]
rs7120852	1.00[EUR][1000 genomes]
rs7126907	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7128209	1.00[EUR][1000 genomes]
rs7128216	1.00[EUR][1000 genomes]
rs7128226	1.00[EUR][1000 genomes]
rs7128933	1.00[EUR][1000 genomes]
rs73417010	1.00[EUR][1000 genomes]
rs73417011	1.00[EUR][1000 genomes]
rs73417012	1.00[EUR][1000 genomes]
rs73417015	1.00[EUR][1000 genomes]
rs7926258	1.00[EUR][1000 genomes]
rs7933131	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs7936618	1.00[EUR][1000 genomes]
rs7942659	1.00[TSI][hapmap]
rs9666192	1.00[EUR][1000 genomes]
rs9667689	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832073	chr11:15822409-15984078	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15915000-15929200	Weak transcription	Esophagus	oesophagus
2	chr11:15915200-15924800	Weak transcription	NHEK	skin
3	chr11:15915800-15928400	Weak transcription	Fetal Kidney	kidney
4	chr11:15918400-15928000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr11:15919600-15924800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr11:15919600-15924800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr11:15919800-15925000	Weak transcription	Hela-S3	cervix
8	chr11:15919800-15934400	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr11:15920800-15925000	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr11:15920800-15926400	Weak transcription	Psoas Muscle	Psoas
11	chr11:15923400-15925400	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr11:15923400-15927200	Weak transcription	Spleen	Spleen
13	chr11:15923400-15927800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr11:15923400-15928200	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr11:15923600-15924800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr11:15923600-15931600	Weak transcription	Fetal Heart	heart
17	chr11:15923600-15933200	Weak transcription	Right Atrium	heart
18	chr11:15923800-15924800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr11:15923800-15924800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr11:15923800-15924800	Weak transcription	Fetal Intestine Small	intestine
21	chr11:15923800-15924800	Weak transcription	Placenta Amnion	Placenta Amnion
22	chr11:15923800-15927800	Weak transcription	Primary neutrophils fromperipheralblood	blood
23	chr11:15923800-15928000	Weak transcription	Primary monocytes fromperipheralblood	blood
24	chr11:15923800-15933200	Weak transcription	Right Ventricle	heart
25	chr11:15924000-15924800	Weak transcription	Placenta	Placenta
26	chr11:15924000-15932000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr11:15924200-15926600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr11:15924400-15924800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr11:15924400-15925000	Weak transcription	Lung	lung
30	chr11:15924400-15925000	Weak transcription	Stomach Mucosa	stomach
31	chr11:15924400-15928400	Weak transcription	Pancreas	Pancrea
32	chr11:15924600-15925000	Weak transcription	Gastric	stomach

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