Variant report

Variant	rs56710873
Chromosome Location	chr11:16099689-16099690
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs1074953	1.00[EUR][1000 genomes]
rs11023752	1.00[EUR][1000 genomes]
rs12099171	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16932474	1.00[EUR][1000 genomes]
rs16932477	1.00[EUR][1000 genomes]
rs16932507	1.00[EUR][1000 genomes]
rs16932558	1.00[EUR][1000 genomes]
rs55776402	1.00[EUR][1000 genomes]
rs55797092	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55836990	1.00[EUR][1000 genomes]
rs56003030	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56013327	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56039367	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56077417	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56110890	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56214661	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56336701	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56339948	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56395489	1.00[EUR][1000 genomes]
rs57058857	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57059428	1.00[EUR][1000 genomes]
rs57534454	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57594599	1.00[EUR][1000 genomes]
rs58248240	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58385655	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58476737	1.00[EUR][1000 genomes]
rs59156755	1.00[EUR][1000 genomes]
rs59237138	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59275453	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59355840	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59732810	1.00[EUR][1000 genomes]
rs59749270	1.00[EUR][1000 genomes]
rs60041887	1.00[EUR][1000 genomes]
rs60082792	1.00[EUR][1000 genomes]
rs60488672	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60693734	1.00[EUR][1000 genomes]
rs60855295	1.00[EUR][1000 genomes]
rs60900176	1.00[EUR][1000 genomes]
rs60968744	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61000891	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61145028	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61292713	1.00[EUR][1000 genomes]
rs61560681	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61573169	1.00[EUR][1000 genomes]
rs6486273	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7101975	1.00[EUR][1000 genomes]
rs7103044	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7103298	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7105445	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7114742	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7118842	1.00[EUR][1000 genomes]
rs7120852	1.00[EUR][1000 genomes]
rs7122351	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7126907	1.00[EUR][1000 genomes]
rs7128209	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7128216	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7128226	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7128933	1.00[EUR][1000 genomes]
rs7130519	1.00[EUR][1000 genomes]
rs7130995	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73417010	1.00[EUR][1000 genomes]
rs73417011	1.00[EUR][1000 genomes]
rs73417012	1.00[EUR][1000 genomes]
rs73417015	1.00[EUR][1000 genomes]
rs7926258	1.00[EUR][1000 genomes]
rs7933131	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7936618	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7949999	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs894006	1.00[EUR][1000 genomes]
rs9666192	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9667689	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832074	chr11:15927105-16100772	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16043000-16102000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr11:16068800-16103800	Weak transcription	Left Ventricle	heart
3	chr11:16083200-16116000	Weak transcription	Fetal Intestine Large	intestine
4	chr11:16089400-16117400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr11:16093400-16103200	Weak transcription	Fetal Intestine Small	intestine
6	chr11:16097000-16115600	Weak transcription	Psoas Muscle	Psoas
7	chr11:16097200-16103800	Weak transcription	Duodenum Mucosa	Duodenum
8	chr11:16097200-16104400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr11:16098400-16104200	Weak transcription	Liver	Liver
10	chr11:16098600-16137000	Weak transcription	Pancreas	Pancrea
11	chr11:16099000-16099800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr11:16099000-16103200	Weak transcription	Fetal Lung	lung
13	chr11:16099200-16099800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr11:16099400-16100400	Strong transcription	Cortex derived primary cultured neurospheres	brain

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