Variant report

Variant	rs61560681
Chromosome Location	chr11:16203475-16203476
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs1074953	1.00[EUR][1000 genomes]
rs12099171	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16932474	1.00[EUR][1000 genomes]
rs16932477	1.00[EUR][1000 genomes]
rs16932507	1.00[EUR][1000 genomes]
rs16932558	1.00[EUR][1000 genomes]
rs55776402	1.00[EUR][1000 genomes]
rs55797092	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55836990	1.00[EUR][1000 genomes]
rs56003030	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56013327	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56039367	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56077417	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56110890	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56214661	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56336701	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56339948	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56395489	1.00[EUR][1000 genomes]
rs56710873	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57058857	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57059428	1.00[EUR][1000 genomes]
rs57534454	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57594599	1.00[EUR][1000 genomes]
rs58248240	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58385655	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58476737	1.00[EUR][1000 genomes]
rs59156755	1.00[EUR][1000 genomes]
rs59237138	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59275453	1.00[EUR][1000 genomes]
rs59355840	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59732810	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59749270	1.00[EUR][1000 genomes]
rs60041887	1.00[EUR][1000 genomes]
rs60082792	1.00[EUR][1000 genomes]
rs60488672	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60693734	1.00[EUR][1000 genomes]
rs60855295	1.00[EUR][1000 genomes]
rs60900176	1.00[EUR][1000 genomes]
rs60968744	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61000891	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61145028	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61292713	1.00[EUR][1000 genomes]
rs61573169	1.00[EUR][1000 genomes]
rs6486273	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7101975	1.00[EUR][1000 genomes]
rs7103044	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7103298	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7105445	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7114742	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7118842	1.00[EUR][1000 genomes]
rs7120852	1.00[EUR][1000 genomes]
rs7122351	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7126907	1.00[EUR][1000 genomes]
rs7128209	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7128216	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7128226	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7130519	1.00[EUR][1000 genomes]
rs7130995	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73417010	1.00[EUR][1000 genomes]
rs73417011	1.00[EUR][1000 genomes]
rs73417012	1.00[EUR][1000 genomes]
rs73417015	1.00[EUR][1000 genomes]
rs7926258	1.00[EUR][1000 genomes]
rs7933131	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7936618	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7949999	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9666192	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9667689	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv553562	chr11:16112180-16220289	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv529731	chr11:16122782-16468170	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv897012	chr11:16189326-16283644	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16185800-16205600	Weak transcription	Fetal Intestine Large	intestine
2	chr11:16193400-16204800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr11:16194800-16206200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr11:16196800-16206400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr11:16197000-16207600	Weak transcription	Fetal Heart	heart
6	chr11:16199600-16206400	Weak transcription	Psoas Muscle	Psoas
7	chr11:16199800-16206400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr11:16200000-16205200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr11:16200200-16204000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr11:16200200-16204400	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr11:16201000-16204200	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr11:16201600-16206200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr11:16201600-16206200	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr11:16201800-16206400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr11:16202000-16205200	Weak transcription	NHDF-Ad	bronchial
16	chr11:16202000-16206200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr11:16202000-16206400	Weak transcription	Osteobl	bone
18	chr11:16202200-16205600	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr11:16202800-16203800	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr11:16202800-16204200	Enhancers	ES-I3 Cell Line	embryonic stem cell
21	chr11:16202800-16204200	Enhancers	iPS-20b Cell Line	embryonic stem cell
22	chr11:16202800-16204400	Enhancers	HUES64 Cell Line	embryonic stem cell
23	chr11:16202800-16204600	Enhancers	iPS-18 Cell Line	embryonic stem cell
24	chr11:16202800-16206200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr11:16203000-16204400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
26	chr11:16203200-16204400	Enhancers	HUES48 Cell Line	embryonic stem cell

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