Variant report

Variant	rs73417012
Chromosome Location	chr11:15998715-15998716
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:15998677..16000251-chr11:16002165..16003933,2	K562	blood:
2	chr11:15989543..15991062-chr11:15998670..16001168,2	K562	blood:

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs1074953	1.00[EUR][1000 genomes]
rs11023752	1.00[EUR][1000 genomes]
rs12099171	1.00[EUR][1000 genomes]
rs16932474	1.00[EUR][1000 genomes]
rs16932477	1.00[EUR][1000 genomes]
rs16932507	1.00[EUR][1000 genomes]
rs16932558	1.00[EUR][1000 genomes]
rs55776402	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55797092	1.00[EUR][1000 genomes]
rs55836990	1.00[EUR][1000 genomes]
rs56003030	1.00[EUR][1000 genomes]
rs56013327	1.00[EUR][1000 genomes]
rs56039367	1.00[EUR][1000 genomes]
rs56077417	1.00[EUR][1000 genomes]
rs56110890	1.00[EUR][1000 genomes]
rs56214661	1.00[EUR][1000 genomes]
rs56336701	1.00[EUR][1000 genomes]
rs56339948	1.00[EUR][1000 genomes]
rs56395489	1.00[EUR][1000 genomes]
rs56710873	1.00[EUR][1000 genomes]
rs57058857	1.00[EUR][1000 genomes]
rs57059428	1.00[EUR][1000 genomes]
rs57534454	1.00[EUR][1000 genomes]
rs57594599	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58248240	1.00[EUR][1000 genomes]
rs58385655	1.00[EUR][1000 genomes]
rs58476737	1.00[EUR][1000 genomes]
rs58692675	0.81[AMR][1000 genomes]
rs59156755	1.00[EUR][1000 genomes]
rs59237138	1.00[EUR][1000 genomes]
rs59275453	1.00[EUR][1000 genomes]
rs59355840	1.00[EUR][1000 genomes]
rs59732810	1.00[EUR][1000 genomes]
rs59749270	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60041887	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60082792	1.00[EUR][1000 genomes]
rs60488672	1.00[EUR][1000 genomes]
rs60693734	1.00[EUR][1000 genomes]
rs60695570	1.00[EUR][1000 genomes]
rs60855295	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60900176	1.00[EUR][1000 genomes]
rs60968744	1.00[EUR][1000 genomes]
rs61000891	1.00[EUR][1000 genomes]
rs61145028	1.00[EUR][1000 genomes]
rs61292713	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61560681	1.00[EUR][1000 genomes]
rs61573169	1.00[EUR][1000 genomes]
rs6486273	1.00[EUR][1000 genomes]
rs7101975	1.00[EUR][1000 genomes]
rs7103044	1.00[EUR][1000 genomes]
rs7103298	1.00[EUR][1000 genomes]
rs7105445	1.00[EUR][1000 genomes]
rs7114742	1.00[EUR][1000 genomes]
rs7118842	1.00[EUR][1000 genomes]
rs7120852	1.00[EUR][1000 genomes]
rs7122351	1.00[EUR][1000 genomes]
rs7126907	1.00[EUR][1000 genomes]
rs7128209	1.00[EUR][1000 genomes]
rs7128216	1.00[EUR][1000 genomes]
rs7128226	1.00[EUR][1000 genomes]
rs7128933	1.00[EUR][1000 genomes]
rs7130519	1.00[EUR][1000 genomes]
rs7130995	1.00[EUR][1000 genomes]
rs73417010	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73417011	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73417015	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7926258	1.00[EUR][1000 genomes]
rs7933131	1.00[EUR][1000 genomes]
rs7936618	1.00[EUR][1000 genomes]
rs7949999	1.00[EUR][1000 genomes]
rs894006	1.00[EUR][1000 genomes]
rs9666192	1.00[EUR][1000 genomes]
rs9667689	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832074	chr11:15927105-16100772	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15990400-16011600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr11:15991600-16006600	Weak transcription	Liver	Liver
3	chr11:15991800-16006800	Weak transcription	Fetal Muscle Leg	muscle
4	chr11:15992400-16006600	Weak transcription	Duodenum Mucosa	Duodenum
5	chr11:15992600-16002400	Weak transcription	Stomach Mucosa	stomach
6	chr11:15992600-16006800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr11:15993000-15999000	Weak transcription	Right Atrium	heart
8	chr11:15993000-16006800	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr11:15993000-16010600	Weak transcription	Pancreas	Pancrea
10	chr11:15993000-16012800	Weak transcription	Right Ventricle	heart
11	chr11:15993200-16009600	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr11:15993200-16010400	Weak transcription	Left Ventricle	heart
13	chr11:15993600-16006600	Weak transcription	Fetal Intestine Small	intestine
14	chr11:15994000-15999600	Strong transcription	Cortex derived primary cultured neurospheres	brain
15	chr11:15995000-16002600	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr11:15995400-16006800	Weak transcription	Fetal Intestine Large	intestine
17	chr11:15997000-15999400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr11:15997200-15999000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr11:15997200-15999200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr11:15997400-15998800	Enhancers	Placenta Amnion	Placenta Amnion
21	chr11:15997400-15999400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr11:15997600-15998800	Enhancers	NHDF-Ad	bronchial
23	chr11:15997600-15999000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr11:15997600-15999400	Enhancers	K562	blood
25	chr11:15997800-16006600	Weak transcription	Fetal Lung	lung
26	chr11:15998000-15998800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr11:15998000-15998800	Enhancers	NHEK	skin
28	chr11:15998200-15998800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr11:15998200-15999600	Enhancers	Fetal Heart	heart
30	chr11:15998200-16011600	Weak transcription	Aorta	Aorta
31	chr11:15998400-15998800	Enhancers	Osteobl	bone
32	chr11:15998600-15998800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr11:15998600-15998800	Weak transcription	Psoas Muscle	Psoas

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links