Variant report

Variant	rs58385655
Chromosome Location	chr11:16122090-16122091
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:16116317..16118652-chr11:16120891..16122652,2	K562	blood:

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs1074953	1.00[EUR][1000 genomes]
rs11023752	1.00[EUR][1000 genomes]
rs12099171	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16932474	1.00[EUR][1000 genomes]
rs16932477	1.00[EUR][1000 genomes]
rs16932507	1.00[EUR][1000 genomes]
rs16932558	1.00[EUR][1000 genomes]
rs55776402	1.00[EUR][1000 genomes]
rs55797092	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55836990	1.00[EUR][1000 genomes]
rs56003030	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56013327	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56039367	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56077417	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56110890	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56214661	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56336701	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56339948	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56395489	1.00[EUR][1000 genomes]
rs56710873	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57058857	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57059428	1.00[EUR][1000 genomes]
rs57534454	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57594599	1.00[EUR][1000 genomes]
rs58248240	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58476737	1.00[EUR][1000 genomes]
rs59156755	1.00[EUR][1000 genomes]
rs59237138	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59275453	1.00[EUR][1000 genomes]
rs59355840	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59732810	1.00[EUR][1000 genomes]
rs59749270	1.00[EUR][1000 genomes]
rs60041887	1.00[EUR][1000 genomes]
rs60082792	1.00[EUR][1000 genomes]
rs60488672	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60693734	1.00[EUR][1000 genomes]
rs60855295	1.00[EUR][1000 genomes]
rs60900176	1.00[EUR][1000 genomes]
rs60968744	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61000891	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61145028	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61292713	1.00[EUR][1000 genomes]
rs61560681	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61573169	1.00[EUR][1000 genomes]
rs6486273	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7101975	1.00[EUR][1000 genomes]
rs7103044	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7103298	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7105445	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7114742	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7118842	1.00[EUR][1000 genomes]
rs7120852	1.00[EUR][1000 genomes]
rs7122351	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7126907	1.00[EUR][1000 genomes]
rs7128209	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7128216	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7128226	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7130519	1.00[EUR][1000 genomes]
rs7130995	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73417010	1.00[EUR][1000 genomes]
rs73417011	1.00[EUR][1000 genomes]
rs73417012	1.00[EUR][1000 genomes]
rs73417015	1.00[EUR][1000 genomes]
rs7926258	1.00[EUR][1000 genomes]
rs7933131	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7936618	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7949999	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs894006	1.00[EUR][1000 genomes]
rs9666192	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9667689	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv553562	chr11:16112180-16220289	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16098600-16137000	Weak transcription	Pancreas	Pancrea
2	chr11:16116200-16122200	Weak transcription	Fetal Heart	heart
3	chr11:16117400-16123200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr11:16119600-16130200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr11:16119800-16122400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr11:16120800-16130800	Weak transcription	Esophagus	oesophagus
7	chr11:16121200-16122800	Enhancers	NHEK	skin
8	chr11:16121400-16122200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr11:16121600-16135400	Weak transcription	Fetal Intestine Large	intestine
10	chr11:16121800-16123600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr11:16121800-16136800	Weak transcription	Small Intestine	intestine
12	chr11:16122000-16122200	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr11:16122000-16127000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr11:16122000-16127000	Weak transcription	Liver	Liver

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