Variant report

Variant	rs60900176
Chromosome Location	chr11:16053716-16053717
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:16051749..16054417-chr11:16055912..16059434,4	K562	blood:
2	chr11:16044417..16046496-chr11:16053170..16054681,2	MCF-7	breast:
3	chr11:16049316..16051485-chr11:16053091..16055803,3	K562	blood:

Variant related genes	Relation type
ENSG00000254878	Chromatin interaction

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs1074953	1.00[EUR][1000 genomes]
rs11023752	1.00[EUR][1000 genomes]
rs12099171	1.00[EUR][1000 genomes]
rs16932474	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16932477	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16932507	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16932558	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55776402	1.00[EUR][1000 genomes]
rs55797092	1.00[EUR][1000 genomes]
rs55836990	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56003030	1.00[EUR][1000 genomes]
rs56013327	1.00[EUR][1000 genomes]
rs56039367	1.00[EUR][1000 genomes]
rs56077417	1.00[EUR][1000 genomes]
rs56110890	1.00[EUR][1000 genomes]
rs56214661	1.00[EUR][1000 genomes]
rs56336701	1.00[EUR][1000 genomes]
rs56339948	1.00[EUR][1000 genomes]
rs56395489	1.00[EUR][1000 genomes]
rs56710873	1.00[EUR][1000 genomes]
rs57058857	1.00[EUR][1000 genomes]
rs57059428	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57534454	1.00[EUR][1000 genomes]
rs57594599	1.00[EUR][1000 genomes]
rs58248240	1.00[EUR][1000 genomes]
rs58385655	1.00[EUR][1000 genomes]
rs58476737	1.00[EUR][1000 genomes]
rs59156755	1.00[EUR][1000 genomes]
rs59237138	1.00[EUR][1000 genomes]
rs59275453	1.00[EUR][1000 genomes]
rs59355840	1.00[EUR][1000 genomes]
rs59732810	1.00[EUR][1000 genomes]
rs59749270	1.00[EUR][1000 genomes]
rs60041887	1.00[EUR][1000 genomes]
rs60082792	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60488672	1.00[EUR][1000 genomes]
rs60693734	1.00[EUR][1000 genomes]
rs60695570	1.00[EUR][1000 genomes]
rs60855295	1.00[EUR][1000 genomes]
rs60968744	1.00[EUR][1000 genomes]
rs61000891	1.00[EUR][1000 genomes]
rs61145028	1.00[EUR][1000 genomes]
rs61292713	1.00[EUR][1000 genomes]
rs61560681	1.00[EUR][1000 genomes]
rs61573169	1.00[EUR][1000 genomes]
rs6486273	1.00[EUR][1000 genomes]
rs7101975	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7103044	1.00[EUR][1000 genomes]
rs7103298	1.00[EUR][1000 genomes]
rs7105445	1.00[EUR][1000 genomes]
rs7114742	1.00[EUR][1000 genomes]
rs7118842	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7120852	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7122351	1.00[EUR][1000 genomes]
rs7126907	1.00[EUR][1000 genomes]
rs7128209	1.00[EUR][1000 genomes]
rs7128216	1.00[EUR][1000 genomes]
rs7128226	1.00[EUR][1000 genomes]
rs7128933	1.00[EUR][1000 genomes]
rs7130519	1.00[EUR][1000 genomes]
rs7130995	1.00[EUR][1000 genomes]
rs73417010	1.00[EUR][1000 genomes]
rs73417011	1.00[EUR][1000 genomes]
rs73417012	1.00[EUR][1000 genomes]
rs73417015	1.00[EUR][1000 genomes]
rs7926258	1.00[EUR][1000 genomes]
rs7933131	1.00[EUR][1000 genomes]
rs7936618	1.00[EUR][1000 genomes]
rs7949999	1.00[EUR][1000 genomes]
rs894006	1.00[EUR][1000 genomes]
rs9666192	1.00[EUR][1000 genomes]
rs9667689	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832074	chr11:15927105-16100772	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv1045933	chr11:16023805-16067955	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16024400-16067200	Weak transcription	Liver	Liver
2	chr11:16024800-16088200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr11:16034200-16079200	Weak transcription	Pancreas	Pancrea
4	chr11:16035000-16057400	Weak transcription	Fetal Intestine Small	intestine
5	chr11:16036000-16073800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr11:16037600-16081200	Weak transcription	Psoas Muscle	Psoas
7	chr11:16038200-16059200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr11:16038200-16065000	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr11:16038200-16067200	Weak transcription	Fetal Muscle Leg	muscle
10	chr11:16039000-16059000	Weak transcription	Aorta	Aorta
11	chr11:16042000-16057400	Weak transcription	Left Ventricle	heart
12	chr11:16043000-16102000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr11:16045800-16054000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr11:16048000-16054400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr11:16050000-16076200	Weak transcription	Fetal Kidney	kidney
16	chr11:16050800-16054400	Weak transcription	Brain Germinal Matrix	brain
17	chr11:16051000-16072400	Weak transcription	Esophagus	oesophagus
18	chr11:16052200-16053800	Enhancers	Fetal Heart	heart
19	chr11:16053000-16053800	Enhancers	Primary neutrophils fromperipheralblood	blood
20	chr11:16053000-16055800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr11:16053400-16055000	Strong transcription	Fetal Intestine Large	intestine
22	chr11:16053600-16061600	Weak transcription	Cortex derived primary cultured neurospheres	brain

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