Variant report

Variant	rs16932558
Chromosome Location	chr11:16119544-16119545
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:16118808..16121567-chr11:16157087..16159349,2	K562	blood:
2	chr11:16113669..16115556-chr11:16118737..16121207,2	K562	blood:

Extended variants
information (count: 90 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:89)

rs_ID	r²[population]
rs1074953	1.00[EUR][1000 genomes]
rs11023752	1.00[EUR][1000 genomes]
rs12099169	1.00[CEU][hapmap]
rs12099171	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs12099378	1.00[CEU][hapmap]
rs1455105	1.00[CEU][hapmap]
rs16924860	1.00[CEU][hapmap]
rs16932474	0.95[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16932477	1.00[CEU][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16932478	1.00[CEU][hapmap]
rs16932480	1.00[CEU][hapmap]
rs16932482	1.00[CEU][hapmap]
rs16932486	1.00[CEU][hapmap]
rs16932493	1.00[CEU][hapmap]
rs16932497	1.00[CEU][hapmap]
rs16932507	1.00[CEU][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16932582	1.00[CEU][hapmap]
rs16932628	1.00[CEU][hapmap]
rs16932631	1.00[CEU][hapmap]
rs16932695	1.00[CEU][hapmap]
rs16932698	1.00[CEU][hapmap]
rs16932704	1.00[CEU][hapmap]
rs4373881	1.00[CEU][hapmap]
rs55776402	1.00[EUR][1000 genomes]
rs55797092	1.00[EUR][1000 genomes]
rs55836990	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56003030	1.00[EUR][1000 genomes]
rs56013327	1.00[EUR][1000 genomes]
rs56039367	1.00[EUR][1000 genomes]
rs56077417	1.00[EUR][1000 genomes]
rs56110890	1.00[EUR][1000 genomes]
rs56214661	1.00[EUR][1000 genomes]
rs56336701	1.00[EUR][1000 genomes]
rs56339948	1.00[EUR][1000 genomes]
rs56395489	1.00[EUR][1000 genomes]
rs56710873	1.00[EUR][1000 genomes]
rs57058857	1.00[EUR][1000 genomes]
rs57059428	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57534454	1.00[EUR][1000 genomes]
rs57594599	1.00[EUR][1000 genomes]
rs58248240	1.00[EUR][1000 genomes]
rs58385655	1.00[EUR][1000 genomes]
rs58476737	1.00[EUR][1000 genomes]
rs59156755	1.00[EUR][1000 genomes]
rs59237138	1.00[EUR][1000 genomes]
rs59275453	1.00[EUR][1000 genomes]
rs59355840	1.00[EUR][1000 genomes]
rs59732810	1.00[EUR][1000 genomes]
rs59749270	1.00[EUR][1000 genomes]
rs60041887	1.00[EUR][1000 genomes]
rs60082792	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60488672	1.00[EUR][1000 genomes]
rs60693734	1.00[EUR][1000 genomes]
rs60855295	1.00[EUR][1000 genomes]
rs60900176	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60968744	1.00[EUR][1000 genomes]
rs61000891	1.00[EUR][1000 genomes]
rs61145028	1.00[EUR][1000 genomes]
rs61292713	1.00[EUR][1000 genomes]
rs61560681	1.00[EUR][1000 genomes]
rs61573169	1.00[EUR][1000 genomes]
rs6486273	1.00[EUR][1000 genomes]
rs7101975	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7103044	1.00[EUR][1000 genomes]
rs7103298	1.00[EUR][1000 genomes]
rs7105445	1.00[EUR][1000 genomes]
rs7114742	1.00[EUR][1000 genomes]
rs7118842	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7120852	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7122351	1.00[EUR][1000 genomes]
rs7126907	1.00[EUR][1000 genomes]
rs7128209	1.00[EUR][1000 genomes]
rs7128216	1.00[EUR][1000 genomes]
rs7128226	1.00[EUR][1000 genomes]
rs7128933	1.00[EUR][1000 genomes]
rs7130519	1.00[EUR][1000 genomes]
rs7130995	1.00[EUR][1000 genomes]
rs73417010	1.00[EUR][1000 genomes]
rs73417011	1.00[EUR][1000 genomes]
rs73417012	1.00[EUR][1000 genomes]
rs73417015	1.00[EUR][1000 genomes]
rs7926258	1.00[EUR][1000 genomes]
rs7933131	1.00[EUR][1000 genomes]
rs7936618	1.00[EUR][1000 genomes]
rs7949999	1.00[EUR][1000 genomes]
rs894006	1.00[EUR][1000 genomes]
rs9666192	1.00[EUR][1000 genomes]
rs9667689	1.00[EUR][1000 genomes]
rs996857	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv553562	chr11:16112180-16220289	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16098600-16137000	Weak transcription	Pancreas	Pancrea
2	chr11:16115400-16119800	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr11:16116200-16122200	Weak transcription	Fetal Heart	heart
4	chr11:16117400-16122000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr11:16117400-16123200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr11:16117600-16120600	Weak transcription	Fetal Intestine Large	intestine
7	chr11:16117800-16120600	Weak transcription	NHLF	lung
8	chr11:16118000-16120600	Weak transcription	HSMM	muscle
9	chr11:16118200-16119800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr11:16118600-16120000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr11:16118600-16120400	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr11:16118800-16120000	Enhancers	Fetal Lung	lung
13	chr11:16118800-16120400	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr11:16118800-16121000	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr11:16118800-16121200	Enhancers	Pancreatic Islets	Pancreatic Islet
16	chr11:16118800-16121600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr11:16118800-16122000	Enhancers	Liver	Liver
18	chr11:16119000-16119600	Enhancers	Duodenum Mucosa	Duodenum
19	chr11:16119000-16120400	Enhancers	Fetal Brain Female	brain
20	chr11:16119000-16120600	Enhancers	Brain Germinal Matrix	brain
21	chr11:16119000-16120800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr11:16119200-16119600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr11:16119200-16120800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr11:16119200-16120800	Enhancers	Brain Anterior Caudate	brain
25	chr11:16119200-16121000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr11:16119200-16121000	Enhancers	Rectal Mucosa Donor 31	rectum
27	chr11:16119200-16121200	Weak transcription	A549	lung
28	chr11:16119200-16122000	Enhancers	HMEC	breast
29	chr11:16119400-16119600	Flanking Active TSS	NHEK	skin
30	chr11:16119400-16120400	Weak transcription	Fetal Muscle Leg	muscle
31	chr11:16119400-16120400	Weak transcription	Psoas Muscle	Psoas
32	chr11:16119400-16120400	Weak transcription	Sigmoid Colon	Sigmoid Colon
33	chr11:16119400-16120400	Weak transcription	Skeletal Muscle Female	skeletal muscle

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