Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:16209269..16212267-chr11:16243598..16245269,2	K562	blood:

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs12099169	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs12099171	1.00[CEU][hapmap]
rs12099378	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs1455105	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs16924860	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs16932477	1.00[CEU][hapmap]
rs16932478	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs16932480	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs16932482	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs16932486	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs16932493	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs16932497	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs16932507	1.00[CEU][hapmap]
rs16932558	1.00[CEU][hapmap]
rs16932582	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs16932628	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs16932631	1.00[CEU][hapmap]
rs16932695	1.00[CEU][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16932704	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4373881	1.00[CEU][hapmap]
rs996857	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv553562	chr11:16112180-16220289	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv529731	chr11:16122782-16468170	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv897012	chr11:16189326-16283644	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv553563	chr11:16206658-16259405	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv897013	chr11:16206658-16307700	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16206600-16212000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr11:16206800-16212800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr11:16206800-16213000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr11:16206800-16215800	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr11:16207000-16211800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr11:16207200-16213000	Weak transcription	NHLF	lung
7	chr11:16207200-16215400	Weak transcription	Fetal Intestine Small	intestine
8	chr11:16207200-16221200	Weak transcription	Fetal Intestine Large	intestine
9	chr11:16207800-16213000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr11:16208000-16212800	Weak transcription	Fetal Heart	heart
11	chr11:16208000-16216400	Weak transcription	A549	lung
12	chr11:16208600-16213000	Weak transcription	Psoas Muscle	Psoas
13	chr11:16208600-16213000	Weak transcription	HepG2	liver
14	chr11:16208800-16212200	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr11:16208800-16213000	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr11:16208800-16214800	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr11:16210600-16216200	Weak transcription	Right Atrium	heart

Quick Search: