Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:16141343..16143231-chr11:16172606..16175476,2	K562	blood:
2	chr11:16174141..16177585-chr11:16182618..16186362,3	K562	blood:

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs12099169	1.00[CEU][hapmap]
rs12099171	1.00[CEU][hapmap]
rs12099378	1.00[CEU][hapmap]
rs1455105	1.00[CEU][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs16924860	1.00[CEU][hapmap]
rs16932477	1.00[CEU][hapmap]
rs16932478	1.00[CEU][hapmap]
rs16932480	1.00[CEU][hapmap]
rs16932482	1.00[CEU][hapmap]
rs16932486	1.00[CEU][hapmap]
rs16932493	1.00[CEU][hapmap]
rs16932497	1.00[CEU][hapmap]
rs16932507	1.00[CEU][hapmap]
rs16932558	1.00[CEU][hapmap]
rs16932582	1.00[CEU][hapmap]
rs16932628	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs16932695	1.00[CEU][hapmap]
rs16932698	1.00[CEU][hapmap]
rs16932704	1.00[CEU][hapmap]
rs2351680	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4373881	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs996857	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv553562	chr11:16112180-16220289	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv529731	chr11:16122782-16468170	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16170800-16175800	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr11:16171000-16175200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr11:16171600-16175600	Weak transcription	Fetal Intestine Large	intestine
4	chr11:16172400-16176000	Weak transcription	Fetal Intestine Small	intestine
5	chr11:16172400-16191400	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr11:16172600-16191400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr11:16173400-16175600	Enhancers	HepG2	liver
8	chr11:16173800-16175400	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr11:16174200-16175200	Weak transcription	HMEC	breast
10	chr11:16174200-16191200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr11:16174600-16176800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr11:16174800-16175600	Enhancers	A549	lung
13	chr11:16174800-16178400	Enhancers	Stomach Mucosa	stomach
14	chr11:16174800-16180000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr11:16175000-16177000	Enhancers	Hela-S3	cervix
16	chr11:16175000-16178400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr11:16175000-16180800	Enhancers	NHEK	skin

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