Variant report

Variant	rs16932704
Chromosome Location	chr11:16216112-16216113
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:16198617..16200800-chr11:16214986..16217270,2	K562	blood:
2	chr11:16215320..16217059-chr11:16240927..16242475,2	K562	blood:
3	chr11:16213165..16216422-chr11:16216965..16220387,3	K562	blood:
4	chr11:16215659..16217331-chr11:16627513..16629554,2	K562	blood:
5	chr11:16215831..16218271-chr11:16626703..16629554,2	K562	blood:

Variant related genes	Relation type
ENSG00000110693	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs12099169	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs12099171	1.00[CEU][hapmap]
rs12099378	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs1455105	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs16924860	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs16932477	1.00[CEU][hapmap]
rs16932478	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs16932480	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs16932482	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs16932486	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs16932493	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs16932497	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs16932507	1.00[CEU][hapmap]
rs16932558	1.00[CEU][hapmap]
rs16932582	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs16932628	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs16932631	1.00[CEU][hapmap]
rs16932695	1.00[CEU][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16932698	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4373881	1.00[CEU][hapmap]
rs996857	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv553562	chr11:16112180-16220289	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv529731	chr11:16122782-16468170	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv897012	chr11:16189326-16283644	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv553563	chr11:16206658-16259405	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv897013	chr11:16206658-16307700	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv897014	chr11:16211343-16283644	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16207200-16221200	Weak transcription	Fetal Intestine Large	intestine
2	chr11:16208000-16216400	Weak transcription	A549	lung
3	chr11:16210600-16216200	Weak transcription	Right Atrium	heart
4	chr11:16212000-16217800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr11:16213200-16217200	Weak transcription	Fetal Stomach	stomach
6	chr11:16213400-16218400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr11:16213600-16216200	Weak transcription	Pancreas	Pancrea
8	chr11:16213600-16217400	Weak transcription	NHLF	lung
9	chr11:16213800-16216200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr11:16213800-16216200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr11:16213800-16217600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr11:16214000-16216200	Weak transcription	Fetal Brain Female	brain
13	chr11:16214600-16216400	Enhancers	Brain Inferior Temporal Lobe	brain
14	chr11:16214800-16216400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr11:16214800-16216600	Enhancers	Brain Germinal Matrix	brain
16	chr11:16214800-16216600	Enhancers	Skeletal Muscle Female	skeletal muscle
17	chr11:16214800-16217600	Enhancers	Fetal Muscle Leg	muscle
18	chr11:16214800-16218200	Enhancers	Cortex derived primary cultured neurospheres	brain
19	chr11:16215000-16216600	Enhancers	Brain Anterior Caudate	brain
20	chr11:16215000-16217000	Enhancers	Brain Hippocampus Middle	brain
21	chr11:16215000-16217600	Enhancers	Fetal Heart	heart
22	chr11:16215200-16216600	Enhancers	iPS-18 Cell Line	embryonic stem cell
23	chr11:16215200-16216600	Enhancers	Brain Cingulate Gyrus	brain
24	chr11:16215200-16217000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr11:16215200-16217800	Enhancers	HepG2	liver
26	chr11:16215400-16216400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr11:16215400-16216400	Flanking Active TSS	Brain Substantia Nigra	brain
28	chr11:16215400-16216400	Enhancers	Psoas Muscle	Psoas
29	chr11:16215400-16216600	Enhancers	ES-I3 Cell Line	embryonic stem cell
30	chr11:16215400-16216600	Enhancers	Brain Angular Gyrus	brain
31	chr11:16215400-16217600	Enhancers	Fetal Lung	lung
32	chr11:16215400-16217600	Enhancers	Right Ventricle	heart
33	chr11:16215400-16217600	Enhancers	Skeletal Muscle Male	skeletal muscle
34	chr11:16215400-16217800	Enhancers	NH-A	brain
35	chr11:16215400-16218000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr11:16215600-16216200	Weak transcription	H9 Cell Line	embryonic stem cell
37	chr11:16215600-16216200	Weak transcription	Left Ventricle	heart
38	chr11:16215600-16216600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr11:16215800-16216400	Enhancers	iPS-15b Cell Line	embryonic stem cell
40	chr11:16215800-16216400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
41	chr11:16215800-16216600	Enhancers	HUES48 Cell Line	embryonic stem cell
42	chr11:16215800-16216600	Enhancers	HUES64 Cell Line	embryonic stem cell
43	chr11:16215800-16216600	Enhancers	iPS-20b Cell Line	embryonic stem cell
44	chr11:16215800-16218000	Enhancers	Osteobl	bone
45	chr11:16216000-16216200	Enhancers	Small Intestine	intestine
46	chr11:16216000-16216400	Enhancers	Adipose Nuclei	Adipose
47	chr11:16216000-16216600	Enhancers	K562	blood
48	chr11:16216000-16217200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr11:16216000-16218000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr11:16216000-16218000	Enhancers	Muscle Satellite Cultured Cells	--

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