Variant report

Variant	rs16932480
Chromosome Location	chr11:16062814-16062815
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:16062557..16063363-chr11:16634999..16635927,3	MCF-7	breast:
2	chr11:16061504..16063486-chr11:16064879..16066876,2	K562	blood:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs12099169	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12099171	1.00[CEU][hapmap]
rs12099378	1.00[CEU][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs1455105	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs16924860	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs16932477	1.00[CEU][hapmap]
rs16932478	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16932482	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs16932486	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16932493	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16932497	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16932507	1.00[CEU][hapmap]
rs16932558	1.00[CEU][hapmap]
rs16932582	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs16932628	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs16932631	1.00[CEU][hapmap]
rs16932695	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs16932698	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs16932704	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs4373881	1.00[CEU][hapmap]
rs996857	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832074	chr11:15927105-16100772	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv1045933	chr11:16023805-16067955	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16024400-16067200	Weak transcription	Liver	Liver
2	chr11:16024800-16088200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr11:16034200-16079200	Weak transcription	Pancreas	Pancrea
4	chr11:16036000-16073800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr11:16037600-16081200	Weak transcription	Psoas Muscle	Psoas
6	chr11:16038200-16065000	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr11:16038200-16067200	Weak transcription	Fetal Muscle Leg	muscle
8	chr11:16043000-16102000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr11:16050000-16076200	Weak transcription	Fetal Kidney	kidney
10	chr11:16051000-16072400	Weak transcription	Esophagus	oesophagus
11	chr11:16054200-16066800	Weak transcription	Duodenum Mucosa	Duodenum
12	chr11:16055000-16064800	Weak transcription	Fetal Intestine Large	intestine
13	chr11:16056400-16065000	Weak transcription	Fetal Heart	heart
14	chr11:16056600-16067200	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr11:16056600-16077200	Weak transcription	Right Ventricle	heart
16	chr11:16057600-16065200	Weak transcription	Left Ventricle	heart
17	chr11:16058000-16064800	Weak transcription	Fetal Intestine Small	intestine
18	chr11:16058600-16066800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr11:16059400-16067800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr11:16060200-16063200	Enhancers	Pancreatic Islets	Pancreatic Islet
21	chr11:16061600-16064400	Enhancers	Cortex derived primary cultured neurospheres	brain
22	chr11:16061800-16063000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr11:16062800-16066800	Weak transcription	Primary neutrophils fromperipheralblood	blood

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