Variant report

Variant	rs12099171
Chromosome Location	chr11:16071014-16071015
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:16060678..16062242-chr11:16069879..16072547,3	K562	blood:
2	chr11:16069116..16071784-chr11:16080729..16082545,2	K562	blood:
3	chr11:16070387..16073209-chr11:16075915..16077883,2	K562	blood:

Extended variants
information (count: 91 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:90)

rs_ID	r²[population]
rs1074953	1.00[EUR][1000 genomes]
rs11023752	1.00[EUR][1000 genomes]
rs12099169	1.00[CEU][hapmap]
rs12099378	1.00[CEU][hapmap]
rs1455105	1.00[CEU][hapmap]
rs16924860	1.00[CEU][hapmap]
rs16932474	1.00[EUR][1000 genomes]
rs16932477	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs16932478	1.00[CEU][hapmap]
rs16932480	1.00[CEU][hapmap]
rs16932482	1.00[CEU][hapmap]
rs16932486	1.00[CEU][hapmap]
rs16932493	1.00[CEU][hapmap]
rs16932497	1.00[CEU][hapmap]
rs16932507	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs16932558	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs16932582	1.00[CEU][hapmap]
rs16932628	1.00[CEU][hapmap]
rs16932631	1.00[CEU][hapmap]
rs16932695	1.00[CEU][hapmap]
rs16932698	1.00[CEU][hapmap]
rs16932704	1.00[CEU][hapmap]
rs4373881	1.00[CEU][hapmap]
rs55776402	1.00[EUR][1000 genomes]
rs55797092	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55836990	1.00[EUR][1000 genomes]
rs56003030	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56013327	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56039367	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56077417	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56110890	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56214661	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56336701	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56339948	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56395489	1.00[EUR][1000 genomes]
rs56710873	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57058857	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57059428	1.00[EUR][1000 genomes]
rs57534454	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57594599	1.00[EUR][1000 genomes]
rs58248240	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58385655	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58476737	1.00[EUR][1000 genomes]
rs59156755	1.00[EUR][1000 genomes]
rs59237138	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59275453	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59355840	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59732810	1.00[EUR][1000 genomes]
rs59749270	1.00[EUR][1000 genomes]
rs60041887	1.00[EUR][1000 genomes]
rs60082792	1.00[EUR][1000 genomes]
rs60488672	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60693734	1.00[EUR][1000 genomes]
rs60695570	1.00[EUR][1000 genomes]
rs60855295	1.00[EUR][1000 genomes]
rs60900176	1.00[EUR][1000 genomes]
rs60968744	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61000891	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61145028	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61292713	1.00[EUR][1000 genomes]
rs61560681	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61573169	1.00[EUR][1000 genomes]
rs6486273	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7101975	1.00[EUR][1000 genomes]
rs7103044	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7103298	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7105445	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7114742	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7118842	1.00[EUR][1000 genomes]
rs7120852	1.00[EUR][1000 genomes]
rs7122351	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7126907	1.00[EUR][1000 genomes]
rs7128209	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7128216	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7128226	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7128933	1.00[EUR][1000 genomes]
rs7130519	1.00[EUR][1000 genomes]
rs7130995	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73417010	1.00[EUR][1000 genomes]
rs73417011	1.00[EUR][1000 genomes]
rs73417012	1.00[EUR][1000 genomes]
rs73417015	1.00[EUR][1000 genomes]
rs7926258	1.00[EUR][1000 genomes]
rs7933131	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7936618	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7949999	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs894006	1.00[EUR][1000 genomes]
rs9666192	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9667689	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs996857	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832074	chr11:15927105-16100772	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16024800-16088200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:16034200-16079200	Weak transcription	Pancreas	Pancrea
3	chr11:16036000-16073800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr11:16037600-16081200	Weak transcription	Psoas Muscle	Psoas
5	chr11:16043000-16102000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr11:16050000-16076200	Weak transcription	Fetal Kidney	kidney
7	chr11:16051000-16072400	Weak transcription	Esophagus	oesophagus
8	chr11:16056600-16077200	Weak transcription	Right Ventricle	heart
9	chr11:16064800-16071600	Strong transcription	Fetal Intestine Large	intestine
10	chr11:16065600-16080400	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr11:16065600-16085400	Weak transcription	Fetal Heart	heart
12	chr11:16066800-16071400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr11:16068000-16074400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr11:16068600-16071400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr11:16068600-16078800	Weak transcription	Duodenum Mucosa	Duodenum
16	chr11:16068800-16103800	Weak transcription	Left Ventricle	heart
17	chr11:16069000-16073600	Weak transcription	Fetal Intestine Small	intestine
18	chr11:16069000-16073600	Weak transcription	Fetal Muscle Leg	muscle
19	chr11:16069000-16074400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr11:16069000-16074400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr11:16069200-16071400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr11:16069200-16073800	Weak transcription	Cortex derived primary cultured neurospheres	brain
23	chr11:16069400-16071200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr11:16069400-16071600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr11:16069400-16079400	Weak transcription	Liver	Liver
26	chr11:16069600-16071400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
27	chr11:16069600-16071400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
28	chr11:16069600-16080400	Weak transcription	Skeletal Muscle Male	skeletal muscle
29	chr11:16069800-16076200	Weak transcription	Fetal Muscle Trunk	muscle
30	chr11:16070200-16077200	Weak transcription	Pancreatic Islets	Pancreatic Islet
31	chr11:16070800-16076000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr11:16071000-16071600	Active TSS	iPS-20b Cell Line	embryonic stem cell
33	chr11:16071000-16071800	Enhancers	HUES48 Cell Line	embryonic stem cell
34	chr11:16071000-16071800	Enhancers	HUES64 Cell Line	embryonic stem cell

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