Variant report

Variant	rs9666192
Chromosome Location	chr11:16133223-16133224
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs1074953	1.00[EUR][1000 genomes]
rs12099171	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16932474	1.00[EUR][1000 genomes]
rs16932477	1.00[EUR][1000 genomes]
rs16932507	1.00[EUR][1000 genomes]
rs16932558	1.00[EUR][1000 genomes]
rs55776402	1.00[EUR][1000 genomes]
rs55797092	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55836990	1.00[EUR][1000 genomes]
rs56003030	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56013327	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56039367	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56077417	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56110890	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56214661	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56336701	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56339948	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56395489	1.00[EUR][1000 genomes]
rs56710873	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57058857	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57059428	1.00[EUR][1000 genomes]
rs57534454	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57594599	1.00[EUR][1000 genomes]
rs58248240	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58385655	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58476737	1.00[EUR][1000 genomes]
rs59156755	1.00[EUR][1000 genomes]
rs59237138	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59275453	1.00[EUR][1000 genomes]
rs59355840	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59732810	1.00[EUR][1000 genomes]
rs59749270	1.00[EUR][1000 genomes]
rs60041887	1.00[EUR][1000 genomes]
rs60082792	1.00[EUR][1000 genomes]
rs60488672	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60693734	1.00[EUR][1000 genomes]
rs60855295	1.00[EUR][1000 genomes]
rs60900176	1.00[EUR][1000 genomes]
rs60968744	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61000891	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61145028	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61292713	1.00[EUR][1000 genomes]
rs61560681	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61573169	1.00[EUR][1000 genomes]
rs6486273	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7101975	1.00[EUR][1000 genomes]
rs7103044	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7103298	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7105445	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7114742	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7118842	1.00[EUR][1000 genomes]
rs7120852	1.00[EUR][1000 genomes]
rs7122351	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7126907	1.00[EUR][1000 genomes]
rs7128209	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7128216	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7128226	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7130519	1.00[EUR][1000 genomes]
rs7130995	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73417010	1.00[EUR][1000 genomes]
rs73417011	1.00[EUR][1000 genomes]
rs73417012	1.00[EUR][1000 genomes]
rs73417015	1.00[EUR][1000 genomes]
rs7926258	1.00[EUR][1000 genomes]
rs7933131	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7936618	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7949999	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs894006	1.00[EUR][1000 genomes]
rs9667689	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv553562	chr11:16112180-16220289	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv529731	chr11:16122782-16468170	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16098600-16137000	Weak transcription	Pancreas	Pancrea
2	chr11:16121600-16135400	Weak transcription	Fetal Intestine Large	intestine
3	chr11:16121800-16136800	Weak transcription	Small Intestine	intestine
4	chr11:16127400-16136000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr11:16131000-16133400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr11:16131000-16133400	Weak transcription	Esophagus	oesophagus
7	chr11:16131200-16135000	Weak transcription	Fetal Intestine Small	intestine
8	chr11:16131400-16133800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr11:16131800-16134400	Enhancers	Fetal Kidney	kidney
10	chr11:16132000-16134200	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr11:16132000-16134800	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr11:16132000-16134800	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr11:16132200-16135400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr11:16132400-16133400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr11:16132400-16133400	Active TSS	Liver	Liver
16	chr11:16132400-16133600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr11:16132400-16133800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr11:16132400-16133800	Enhancers	HUES6 Cell Line	embryonic stem cell
19	chr11:16132400-16134800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr11:16132400-16135200	Enhancers	Cortex derived primary cultured neurospheres	brain
21	chr11:16132600-16134000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr11:16132600-16134000	Enhancers	HepG2	liver
23	chr11:16132600-16134400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr11:16133000-16133400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr11:16133000-16133400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr11:16133000-16133600	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
27	chr11:16133000-16133600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
28	chr11:16133000-16133800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr11:16133000-16134000	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr11:16133000-16136200	Weak transcription	Pancreatic Islets	Pancreatic Islet
31	chr11:16133200-16133400	Active TSS	Skeletal Muscle Male	skeletal muscle
32	chr11:16133200-16133400	Enhancers	NHEK	skin
33	chr11:16133200-16133600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr11:16133200-16133600	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
35	chr11:16133200-16133600	Flanking Active TSS	Adipose Nuclei	Adipose
36	chr11:16133200-16133600	Active TSS	Brain Anterior Caudate	brain
37	chr11:16133200-16133600	Enhancers	Fetal Muscle Trunk	muscle
38	chr11:16133200-16133600	Enhancers	Fetal Muscle Leg	muscle
39	chr11:16133200-16133600	Enhancers	Placenta	Placenta
40	chr11:16133200-16133600	Enhancers	Left Ventricle	heart
41	chr11:16133200-16133600	Enhancers	Psoas Muscle	Psoas
42	chr11:16133200-16133600	Flanking Active TSS	Right Atrium	heart
43	chr11:16133200-16133800	Enhancers	ES-I3 Cell Line	embryonic stem cell
44	chr11:16133200-16134000	Enhancers	Skeletal Muscle Female	skeletal muscle
45	chr11:16133200-16134200	Enhancers	Fetal Lung	lung
46	chr11:16133200-16136800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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