Variant report

Variant	rs11023765
Chromosome Location	chr11:15910940-15910941
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:15910536..15912312-chr11:15915422..15917800,2	MCF-7	breast:
2	chr11:15906360..15909550-chr11:15909837..15912358,3	K562	blood:
3	chr11:15909777..15911277-chr11:15917312..15918819,2	MCF-7	breast:
4	chr11:15906688..15908663-chr11:15909864..15911546,2	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10832528	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11023754	0.83[ASN][1000 genomes]
rs11023756	0.85[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs11023759	0.89[ASN][1000 genomes]
rs1440702	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1440703	0.93[ASN][1000 genomes]
rs1866819	0.87[ASN][1000 genomes]
rs2196961	0.85[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs4756839	0.86[ASN][1000 genomes]
rs4757377	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs732908	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832073	chr11:15822409-15984078	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15893600-15914000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:15906600-15914400	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr11:15906800-15911200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr11:15906800-15911400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr11:15906800-15911600	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr11:15907000-15911000	Enhancers	Placenta	Placenta
7	chr11:15907200-15914600	Weak transcription	Left Ventricle	heart
8	chr11:15907600-15914400	Weak transcription	Fetal Brain Female	brain
9	chr11:15907600-15914400	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr11:15907800-15911800	Weak transcription	Fetal Brain Male	brain
11	chr11:15908000-15911000	Weak transcription	Brain Germinal Matrix	brain
12	chr11:15908200-15917800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr11:15908800-15911400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr11:15908800-15911800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr11:15909000-15911000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr11:15909200-15911600	Enhancers	K562	blood
17	chr11:15909600-15912200	Enhancers	Ovary	ovary
18	chr11:15909800-15912400	Enhancers	Cortex derived primary cultured neurospheres	brain
19	chr11:15910000-15911000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
20	chr11:15910000-15911400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr11:15910000-15911400	Enhancers	Fetal Intestine Large	intestine
22	chr11:15910000-15912200	Enhancers	Fetal Stomach	stomach
23	chr11:15910000-15912600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr11:15910000-15912600	Enhancers	NH-A	brain
25	chr11:15910000-15912800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr11:15910400-15911400	Enhancers	Osteobl	bone
27	chr11:15910400-15911800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr11:15910400-15912000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr11:15910400-15912200	Enhancers	Right Atrium	heart
30	chr11:15910400-15922800	Weak transcription	Fetal Intestine Small	intestine
31	chr11:15910600-15911000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr11:15910600-15913800	Weak transcription	Fetal Heart	heart
33	chr11:15910600-15914400	Weak transcription	Fetal Lung	lung
34	chr11:15910800-15911800	Weak transcription	Fetal Kidney	kidney

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