Variant report

Variant	rs11023756
Chromosome Location	chr11:15897415-15897416
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10766289	0.91[AMR][1000 genomes]
rs10832526	0.91[AMR][1000 genomes]
rs10832527	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10832528	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11023749	0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11023751	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11023754	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.93[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11023759	0.92[ASN][1000 genomes]
rs11023765	0.85[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs11604993	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1371909	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1440702	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1440703	0.88[ASN][1000 genomes]
rs1440708	0.81[JPT][hapmap]
rs1440709	0.81[JPT][hapmap]
rs1440718	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1440719	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1440720	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1866819	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1866821	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1920667	0.81[JPT][hapmap]
rs2008923	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2011772	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2083526	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2119375	0.84[AMR][1000 genomes]
rs2196961	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2582309	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2615023	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2615024	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2615042	0.82[JPT][hapmap]
rs4756839	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4757377	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56183020	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7122245	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs732908	0.91[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs874189	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs882148	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs965476	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832073	chr11:15822409-15984078	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15893600-15914000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:15894000-15897600	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr11:15894200-15897800	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr11:15894400-15897600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr11:15895400-15897800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr11:15895800-15900200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr11:15896000-15899400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr11:15897000-15898000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr11:15897000-15898000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr11:15897000-15898200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr11:15897000-15898200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr11:15897000-15898400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr11:15897000-15898400	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr11:15897000-15898400	Enhancers	Fetal Intestine Small	intestine
15	chr11:15897200-15898000	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr11:15897200-15898400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr11:15897400-15897800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr11:15897400-15898000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr11:15897400-15898000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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