Variant report

Variant	rs7122245
Chromosome Location	chr11:15911414-15911415
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:15910536..15912312-chr11:15915422..15917800,2	MCF-7	breast:
2	chr11:15906360..15909550-chr11:15909837..15912358,3	K562	blood:
3	chr11:15906688..15908663-chr11:15909864..15911546,2	K562	blood:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10766290	0.82[AMR][1000 genomes]
rs10832527	0.85[EUR][1000 genomes]
rs10832528	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11023749	0.85[EUR][1000 genomes]
rs11023751	0.85[EUR][1000 genomes]
rs11023753	0.82[AMR][1000 genomes]
rs11023754	1.00[CEU][hapmap];0.81[JPT][hapmap];0.88[EUR][1000 genomes]
rs11023756	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11023763	0.91[AMR][1000 genomes]
rs11023766	0.83[AMR][1000 genomes]
rs11604993	0.85[EUR][1000 genomes]
rs12270765	0.83[AMR][1000 genomes]
rs12287547	0.84[AMR][1000 genomes]
rs12364139	0.82[AMR][1000 genomes]
rs1371909	0.86[EUR][1000 genomes]
rs1440702	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1440705	0.88[AMR][1000 genomes]
rs1440707	0.81[AMR][1000 genomes]
rs1440719	0.85[EUR][1000 genomes]
rs1440720	0.85[EUR][1000 genomes]
rs1866819	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1866820	0.83[AMR][1000 genomes]
rs2008923	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2083526	0.85[EUR][1000 genomes]
rs2196961	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2218204	0.83[AMR][1000 genomes]
rs2582309	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2615023	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2615024	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4756835	0.82[AMR][1000 genomes]
rs4756837	0.88[AMR][1000 genomes]
rs4756839	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4757371	0.82[AMR][1000 genomes]
rs4757373	0.82[AMR][1000 genomes]
rs4757374	0.86[AMR][1000 genomes]
rs4757375	0.82[AMR][1000 genomes]
rs4757377	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7106197	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7481566	0.83[AMR][1000 genomes]
rs965476	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs982988	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832073	chr11:15822409-15984078	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15893600-15914000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:15906600-15914400	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr11:15906800-15911600	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr11:15907200-15914600	Weak transcription	Left Ventricle	heart
5	chr11:15907600-15914400	Weak transcription	Fetal Brain Female	brain
6	chr11:15907600-15914400	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr11:15907800-15911800	Weak transcription	Fetal Brain Male	brain
8	chr11:15908200-15917800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr11:15908800-15911800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr11:15909200-15911600	Enhancers	K562	blood
11	chr11:15909600-15912200	Enhancers	Ovary	ovary
12	chr11:15909800-15912400	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr11:15910000-15912200	Enhancers	Fetal Stomach	stomach
14	chr11:15910000-15912600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr11:15910000-15912600	Enhancers	NH-A	brain
16	chr11:15910000-15912800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr11:15910400-15911800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr11:15910400-15912000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr11:15910400-15912200	Enhancers	Right Atrium	heart
20	chr11:15910400-15922800	Weak transcription	Fetal Intestine Small	intestine
21	chr11:15910600-15913800	Weak transcription	Fetal Heart	heart
22	chr11:15910600-15914400	Weak transcription	Fetal Lung	lung
23	chr11:15910800-15911800	Weak transcription	Fetal Kidney	kidney
24	chr11:15911000-15911600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr11:15911000-15912200	Enhancers	Brain Germinal Matrix	brain
26	chr11:15911000-15912400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr11:15911200-15912000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr11:15911200-15912200	Enhancers	Muscle Satellite Cultured Cells	--
29	chr11:15911400-15911600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr11:15911400-15911600	Flanking Active TSS	Osteobl	bone
31	chr11:15911400-15912200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr11:15911400-15912400	Enhancers	Placenta	Placenta
33	chr11:15911400-15912400	Enhancers	HSMM	muscle
34	chr11:15911400-15912600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr11:15911400-15914800	Weak transcription	Stomach Mucosa	stomach
36	chr11:15911400-15916000	Weak transcription	Spleen	Spleen

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