Variant report

Variant	rs4756837
Chromosome Location	chr11:15917657-15917658
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:15910536..15912312-chr11:15915422..15917800,2	MCF-7	breast:
2	chr11:15909777..15911277-chr11:15917312..15918819,2	MCF-7	breast:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10766290	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10832526	0.80[ASN][1000 genomes]
rs11023753	0.91[CEU][hapmap];0.88[CHB][hapmap];0.89[JPT][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11023757	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11023763	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11023766	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11023768	0.84[EUR][1000 genomes]
rs11023769	0.84[EUR][1000 genomes]
rs11023770	0.81[EUR][1000 genomes]
rs11023771	0.81[EUR][1000 genomes]
rs11023772	0.81[EUR][1000 genomes]
rs12270494	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12270765	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12287547	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12289250	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12290232	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12364139	0.91[CEU][hapmap];0.94[CHB][hapmap];0.89[JPT][hapmap];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12789155	0.84[EUR][1000 genomes]
rs1440705	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1440707	0.91[CEU][hapmap];0.94[CHB][hapmap];0.89[JPT][hapmap];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1866820	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2008923	0.97[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2119376	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2218204	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2582309	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2615023	0.97[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2615024	0.97[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4756835	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4756836	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4757370	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4757371	0.91[CEU][hapmap];0.89[CHB][hapmap];0.89[JPT][hapmap];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4757373	0.91[CEU][hapmap];0.83[CHB][hapmap];0.89[JPT][hapmap];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4757374	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4757375	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7106197	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7122245	0.88[AMR][1000 genomes]
rs7481566	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs965476	0.97[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs982988	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832073	chr11:15822409-15984078	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15908200-15917800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr11:15910400-15922800	Weak transcription	Fetal Intestine Small	intestine
3	chr11:15914800-15922200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr11:15915000-15923200	Weak transcription	Pancreas	Pancrea
5	chr11:15915000-15929200	Weak transcription	Esophagus	oesophagus
6	chr11:15915200-15917800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr11:15915200-15918800	Weak transcription	NH-A	brain
8	chr11:15915200-15919000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr11:15915200-15919000	Weak transcription	HMEC	breast
10	chr11:15915200-15922800	Weak transcription	Left Ventricle	heart
11	chr11:15915200-15923000	Weak transcription	Gastric	stomach
12	chr11:15915200-15923000	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr11:15915200-15924800	Weak transcription	NHEK	skin
14	chr11:15915400-15918200	Weak transcription	Primary neutrophils fromperipheralblood	blood
15	chr11:15915400-15923000	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr11:15915400-15923600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr11:15915600-15918800	Weak transcription	Hela-S3	cervix
18	chr11:15915800-15918800	Weak transcription	Osteobl	bone
19	chr11:15915800-15919200	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr11:15915800-15928400	Weak transcription	Fetal Kidney	kidney
21	chr11:15916000-15919000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr11:15916000-15919000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr11:15916000-15919000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr11:15916000-15919400	Weak transcription	HSMMtube	muscle
25	chr11:15916000-15922400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr11:15916000-15922600	Weak transcription	Fetal Heart	heart
27	chr11:15916000-15922600	Weak transcription	Ovary	ovary
28	chr11:15916200-15919400	Weak transcription	Spleen	Spleen
29	chr11:15916200-15922400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr11:15916600-15919200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr11:15916800-15917800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
32	chr11:15916800-15921200	Enhancers	Fetal Muscle Leg	muscle
33	chr11:15917200-15920800	Enhancers	Skeletal Muscle Male	skeletal muscle
34	chr11:15917200-15920800	Enhancers	Skeletal Muscle Female	skeletal muscle
35	chr11:15917600-15918000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
36	chr11:15917600-15918400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr11:15917600-15919800	Enhancers	Cortex derived primary cultured neurospheres	brain
38	chr11:15917600-15920800	Enhancers	Psoas Muscle	Psoas

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