Variant report

Variant	rs7106197
Chromosome Location	chr11:15910248-15910249
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:15906360..15909550-chr11:15909837..15912358,3	K562	blood:
2	chr11:15909777..15911277-chr11:15917312..15918819,2	MCF-7	breast:
3	chr11:15906688..15908663-chr11:15909864..15911546,2	K562	blood:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10766289	0.84[EUR][1000 genomes]
rs10766290	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10832526	0.84[EUR][1000 genomes]
rs11023753	1.00[CEU][hapmap];0.87[CHB][hapmap];0.89[JPT][hapmap];0.84[YRI][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11023754	0.82[CEU][hapmap]
rs11023757	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11023763	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11023766	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12270494	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12270765	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12287547	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12289250	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12290232	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12364139	1.00[CEU][hapmap];0.94[CHB][hapmap];0.88[JPT][hapmap];0.83[YRI][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1440705	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1440707	1.00[CEU][hapmap];0.94[CHB][hapmap];0.88[JPT][hapmap];0.83[YRI][hapmap];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1866820	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2008923	0.92[AMR][1000 genomes]
rs2119376	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2218204	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2615023	0.92[AMR][1000 genomes]
rs2615024	0.92[AMR][1000 genomes]
rs4756835	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4756836	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4756837	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4757370	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4757371	1.00[CEU][hapmap];0.88[CHB][hapmap];0.89[JPT][hapmap];0.84[YRI][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4757373	1.00[CEU][hapmap];0.87[CHB][hapmap];0.89[JPT][hapmap];0.84[YRI][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4757374	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4757375	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7122245	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7481566	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs965476	0.92[AMR][1000 genomes]
rs982988	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832073	chr11:15822409-15984078	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15893600-15914000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:15906000-15910400	Weak transcription	Fetal Kidney	kidney
3	chr11:15906600-15914400	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr11:15906800-15910400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr11:15906800-15911200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr11:15906800-15911400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr11:15906800-15911600	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr11:15907000-15911000	Enhancers	Placenta	Placenta
9	chr11:15907200-15914600	Weak transcription	Left Ventricle	heart
10	chr11:15907600-15910400	Weak transcription	Right Atrium	heart
11	chr11:15907600-15914400	Weak transcription	Fetal Brain Female	brain
12	chr11:15907600-15914400	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr11:15907800-15911800	Weak transcription	Fetal Brain Male	brain
14	chr11:15908000-15911000	Weak transcription	Brain Germinal Matrix	brain
15	chr11:15908200-15917800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr11:15908800-15911400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr11:15908800-15911800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr11:15909000-15910400	Weak transcription	Osteobl	bone
19	chr11:15909000-15911000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr11:15909200-15911600	Enhancers	K562	blood
21	chr11:15909600-15912200	Enhancers	Ovary	ovary
22	chr11:15909800-15912400	Enhancers	Cortex derived primary cultured neurospheres	brain
23	chr11:15910000-15910400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr11:15910000-15910400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr11:15910000-15910400	Enhancers	Fetal Intestine Small	intestine
26	chr11:15910000-15910600	Enhancers	Fetal Heart	heart
27	chr11:15910000-15911000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
28	chr11:15910000-15911400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr11:15910000-15911400	Enhancers	Fetal Intestine Large	intestine
30	chr11:15910000-15912200	Enhancers	Fetal Stomach	stomach
31	chr11:15910000-15912600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr11:15910000-15912600	Enhancers	NH-A	brain
33	chr11:15910000-15912800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr11:15910200-15910600	Enhancers	Fetal Lung	lung

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