Variant report

Variant	rs10766289
Chromosome Location	chr11:15884282-15884283
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:15852315..15854406-chr11:15883886..15886816,2	K562	blood:
2	chr11:15881637..15884616-chr11:15884653..15886949,2	K562	blood:
3	chr11:15884047..15885599-chr11:15894143..15896030,2	K562	blood:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10766290	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10832526	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10832527	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10832528	0.87[AMR][1000 genomes]
rs11023747	0.83[EUR][1000 genomes]
rs11023749	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11023751	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11023753	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11023754	0.91[AMR][1000 genomes]
rs11023756	0.91[AMR][1000 genomes]
rs11023757	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11023763	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11023768	0.81[ASN][1000 genomes]
rs11023769	0.81[ASN][1000 genomes]
rs11023770	0.81[ASN][1000 genomes]
rs11023771	0.82[ASN][1000 genomes]
rs11023772	0.82[ASN][1000 genomes]
rs11604993	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12287547	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12289250	0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12290232	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12364139	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12789155	0.81[ASN][1000 genomes]
rs1371909	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1440702	0.87[AMR][1000 genomes]
rs1440705	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1440707	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1440719	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1440720	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1866819	0.90[AMR][1000 genomes]
rs1866820	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2002372	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2083526	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2119376	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2196961	0.91[AMR][1000 genomes]
rs2218204	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4756835	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4756836	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4756839	0.82[AMR][1000 genomes]
rs4757370	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4757371	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4757373	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4757374	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4757375	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4757377	0.87[AMR][1000 genomes]
rs7106197	0.84[EUR][1000 genomes]
rs732908	0.82[AMR][1000 genomes]
rs7481566	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs982988	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832073	chr11:15822409-15984078	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15877200-15885200	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr11:15880600-15885000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr11:15881200-15886600	Enhancers	Fetal Heart	heart
4	chr11:15883400-15887800	Weak transcription	Right Atrium	heart

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