Variant report

Variant	rs1440702
Chromosome Location	chr11:15914693-15914694
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:15906546..15908430-chr11:15913226..15915549,2	K562	blood:
2	chr11:15913305..15915564-chr11:15919209..15921241,2	MCF-7	breast:
3	chr11:15912241..15914705-chr11:15921735..15923958,3	K562	blood:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10766289	0.87[AMR][1000 genomes]
rs10832526	0.87[AMR][1000 genomes]
rs10832527	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10832528	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11023749	0.96[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11023751	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11023754	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11023756	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11023759	0.89[ASN][1000 genomes]
rs11023765	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11604993	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1371909	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1440703	0.93[ASN][1000 genomes]
rs1440718	0.83[ASN][1000 genomes]
rs1440719	0.97[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1440720	0.97[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1866819	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1866821	0.83[ASN][1000 genomes]
rs2008923	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2083526	0.97[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2119375	0.81[AMR][1000 genomes]
rs2196961	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2582309	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2615023	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2615024	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4756839	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4757377	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7122245	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs732908	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs882148	0.83[AFR][1000 genomes]
rs965476	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832073	chr11:15822409-15984078	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15908200-15917800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr11:15910400-15922800	Weak transcription	Fetal Intestine Small	intestine
3	chr11:15911400-15914800	Weak transcription	Stomach Mucosa	stomach
4	chr11:15911400-15916000	Weak transcription	Spleen	Spleen
5	chr11:15912200-15915000	Weak transcription	Ovary	ovary
6	chr11:15913800-15915400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr11:15913800-15915600	Enhancers	Placenta	Placenta
8	chr11:15913800-15915800	Enhancers	Primary hematopoietic stem cells	blood
9	chr11:15913800-15916000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr11:15913800-15916000	Enhancers	Fetal Heart	heart
11	chr11:15913800-15916600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr11:15914000-15915800	Enhancers	Placenta Amnion	Placenta Amnion
13	chr11:15914000-15916200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr11:15914000-15916200	Enhancers	Fetal Stomach	stomach
15	chr11:15914000-15916400	Enhancers	Fetal Muscle Leg	muscle
16	chr11:15914000-15916400	Enhancers	Stomach Smooth Muscle	stomach
17	chr11:15914200-15914800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr11:15914200-15915200	Enhancers	NHEK	skin
19	chr11:15914200-15915600	Enhancers	Hela-S3	cervix
20	chr11:15914200-15915800	Enhancers	K562	blood
21	chr11:15914200-15915800	Enhancers	Osteobl	bone
22	chr11:15914200-15916000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr11:15914200-15916000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr11:15914400-15914800	Weak transcription	Lung	lung
25	chr11:15914400-15915000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr11:15914400-15915000	Enhancers	Muscle Satellite Cultured Cells	--
27	chr11:15914400-15915000	Enhancers	Colon Smooth Muscle	Colon
28	chr11:15914400-15915200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr11:15914400-15915200	Enhancers	HMEC	breast
30	chr11:15914400-15915400	Enhancers	Fetal Brain Female	brain
31	chr11:15914400-15915600	Enhancers	HSMM	muscle
32	chr11:15914400-15915800	Enhancers	Cortex derived primary cultured neurospheres	brain
33	chr11:15914400-15915800	Enhancers	Fetal Kidney	kidney
34	chr11:15914400-15916000	Enhancers	Fetal Lung	lung
35	chr11:15914400-15916000	Enhancers	Skeletal Muscle Male	skeletal muscle
36	chr11:15914600-15914800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr11:15914600-15914800	Enhancers	Primary hematopoietic stem cells short term culture	blood
38	chr11:15914600-15915000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr11:15914600-15915000	Enhancers	Brain Cingulate Gyrus	brain
40	chr11:15914600-15915000	Enhancers	Esophagus	oesophagus
41	chr11:15914600-15915000	Weak transcription	Fetal Brain Male	brain
42	chr11:15914600-15915000	Enhancers	Pancreas	Pancrea
43	chr11:15914600-15915200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr11:15914600-15915200	Enhancers	Left Ventricle	heart
45	chr11:15914600-15915200	Enhancers	Right Atrium	heart
46	chr11:15914600-15915200	Enhancers	NH-A	brain
47	chr11:15914600-15915800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr11:15914600-15915800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
49	chr11:15914600-15915800	Enhancers	Skeletal Muscle Female	skeletal muscle
50	chr11:15914600-15916000	Enhancers	HSMMtube	muscle

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