Variant report

Variant	rs1371909
Chromosome Location	chr11:15885603-15885604
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:15852315..15854406-chr11:15883886..15886816,2	K562	blood:
2	chr11:15881637..15884616-chr11:15884653..15886949,2	K562	blood:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10766286	0.87[ASN][1000 genomes]
rs10766289	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10832526	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10832527	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10832528	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11023740	0.86[ASN][1000 genomes]
rs11023745	0.87[ASN][1000 genomes]
rs11023749	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11023751	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11023754	1.00[CEU][hapmap];0.90[CHB][hapmap];0.93[JPT][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11023756	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11604993	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12576777	0.87[ASN][1000 genomes]
rs1440702	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1440708	0.86[JPT][hapmap]
rs1440709	0.86[JPT][hapmap]
rs1440718	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1440719	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1440720	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1866819	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1866821	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1920667	0.86[JPT][hapmap]
rs2011772	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2083526	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2119375	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2196961	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2218205	0.87[ASN][1000 genomes]
rs2351392	0.87[ASN][1000 genomes]
rs2615042	0.87[JPT][hapmap]
rs4459259	0.86[ASN][1000 genomes]
rs4756839	0.85[AMR][1000 genomes]
rs4757377	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs55842281	0.86[ASN][1000 genomes]
rs56183020	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61878488	0.85[ASN][1000 genomes]
rs7122245	0.86[EUR][1000 genomes]
rs727324	0.85[ASN][1000 genomes]
rs732908	0.85[AMR][1000 genomes]
rs874189	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs882148	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832073	chr11:15822409-15984078	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15881200-15886600	Enhancers	Fetal Heart	heart
2	chr11:15883400-15887800	Weak transcription	Right Atrium	heart
3	chr11:15884600-15887600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr11:15885000-15886000	Enhancers	H9 Cell Line	embryonic stem cell
5	chr11:15885000-15886000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr11:15885000-15886400	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr11:15885000-15887800	Enhancers	Hela-S3	cervix
8	chr11:15885200-15886000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr11:15885200-15886400	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr11:15885400-15886400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr11:15885400-15886600	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr11:15885600-15885800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr11:15885600-15886000	Enhancers	H1 Cell Line	embryonic stem cell
14	chr11:15885600-15886200	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr11:15885600-15886200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr11:15885600-15886400	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr11:15885600-15887000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr11:15885600-15887400	Enhancers	Placenta	Placenta
19	chr11:15885600-15888000	Enhancers	Esophagus	oesophagus

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