Variant report

Variant	rs1440719
Chromosome Location	chr11:15887707-15887708
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10766286	0.87[ASN][1000 genomes]
rs10766289	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10832526	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10832527	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10832528	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11023740	0.86[ASN][1000 genomes]
rs11023745	0.87[ASN][1000 genomes]
rs11023749	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11023751	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11023754	0.95[CEU][hapmap];0.89[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11023756	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11023759	0.80[ASN][1000 genomes]
rs11604993	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12576777	0.87[ASN][1000 genomes]
rs1371909	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1440702	0.97[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1440718	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1440720	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1866819	0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1866821	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2011772	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2083526	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2119375	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2196961	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2218205	0.87[ASN][1000 genomes]
rs2351392	0.87[ASN][1000 genomes]
rs2615042	0.80[JPT][hapmap]
rs4459259	0.86[ASN][1000 genomes]
rs4756839	0.91[AMR][1000 genomes]
rs4757377	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs55842281	0.86[ASN][1000 genomes]
rs56183020	0.96[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61878488	0.83[ASN][1000 genomes]
rs7122245	0.85[EUR][1000 genomes]
rs727324	0.85[ASN][1000 genomes]
rs732908	0.91[AMR][1000 genomes]
rs874189	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs882148	0.91[AFR][1000 genomes];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832073	chr11:15822409-15984078	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15883400-15887800	Weak transcription	Right Atrium	heart
2	chr11:15885000-15887800	Enhancers	Hela-S3	cervix
3	chr11:15885600-15888000	Enhancers	Esophagus	oesophagus
4	chr11:15886000-15888000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr11:15886000-15888400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr11:15886600-15888000	Enhancers	HMEC	breast
7	chr11:15886800-15892600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr11:15887400-15888200	Enhancers	NHEK	skin
9	chr11:15887400-15888800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr11:15887400-15892600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr11:15887400-15892800	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr11:15887600-15892000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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