Variant report

Variant	rs1440718
Chromosome Location	chr11:15888147-15888148
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10766286	0.87[ASN][1000 genomes]
rs10832527	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10832528	0.83[ASN][1000 genomes]
rs11023740	0.86[ASN][1000 genomes]
rs11023745	0.87[ASN][1000 genomes]
rs11023749	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11023751	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11023754	0.96[CEU][hapmap];0.90[CHB][hapmap];0.98[GIH][hapmap];0.94[JPT][hapmap];0.83[MEX][hapmap];0.90[TSI][hapmap];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11023756	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11023759	0.80[ASN][1000 genomes]
rs11023770	0.80[AMR][1000 genomes]
rs11023771	0.80[AMR][1000 genomes]
rs11023772	0.80[AMR][1000 genomes]
rs11604993	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12576777	0.87[ASN][1000 genomes]
rs1371909	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1440702	0.83[ASN][1000 genomes]
rs1440708	0.82[GIH][hapmap];0.81[JPT][hapmap];0.91[MEX][hapmap]
rs1440709	0.81[JPT][hapmap];0.84[MEX][hapmap]
rs1440719	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1440720	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1866819	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1866821	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1920667	0.82[GIH][hapmap];0.81[JPT][hapmap];0.83[MEX][hapmap]
rs2011772	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2083526	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2119375	0.90[ASN][1000 genomes]
rs2196961	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2218205	0.87[ASN][1000 genomes]
rs2351392	0.87[ASN][1000 genomes]
rs2615042	0.81[JPT][hapmap]
rs4459259	0.86[ASN][1000 genomes]
rs4757372	0.90[YRI][hapmap];0.84[AFR][1000 genomes]
rs4757377	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs55842281	0.86[ASN][1000 genomes]
rs56183020	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61878488	0.83[ASN][1000 genomes]
rs727324	0.85[ASN][1000 genomes]
rs874189	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs882148	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832073	chr11:15822409-15984078	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1440718	DKK3	cis	cerebellum	SCAN

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15886000-15888400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr11:15886800-15892600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr11:15887400-15888200	Enhancers	NHEK	skin
4	chr11:15887400-15888800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr11:15887400-15892600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr11:15887400-15892800	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr11:15887600-15892000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr11:15888000-15889000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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