Variant report

Variant	rs11023772
Chromosome Location	chr11:15922302-15922303
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:15919975..15921591-chr11:15922021..15924806,2	K562	blood:
2	chr11:15914710..15917174-chr11:15920611..15923591,2	K562	blood:
3	chr11:15912241..15914705-chr11:15921735..15923958,3	K562	blood:

Extended variants
information (count: 18 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10766289	0.82[ASN][1000 genomes]
rs10832526	0.83[ASN][1000 genomes]
rs11023753	0.82[CHB][hapmap]
rs11023766	0.81[EUR][1000 genomes]
rs11023768	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11023769	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11023770	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11023771	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12270494	0.87[EUR][1000 genomes]
rs12270765	0.81[EUR][1000 genomes]
rs12789155	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1440708	0.83[MEX][hapmap]
rs1440718	0.80[AMR][1000 genomes]
rs1866821	0.80[AMR][1000 genomes]
rs4756837	0.81[EUR][1000 genomes]
rs4756839	0.81[EUR][1000 genomes]
rs732908	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832073	chr11:15822409-15984078	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs11023772	DKK3	cis	cerebellum	SCAN
rs11023772	FAR1	cis	cerebellum	SCAN

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15910400-15922800	Weak transcription	Fetal Intestine Small	intestine
2	chr11:15915000-15923200	Weak transcription	Pancreas	Pancrea
3	chr11:15915000-15929200	Weak transcription	Esophagus	oesophagus
4	chr11:15915200-15922800	Weak transcription	Left Ventricle	heart
5	chr11:15915200-15923000	Weak transcription	Gastric	stomach
6	chr11:15915200-15923000	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr11:15915200-15924800	Weak transcription	NHEK	skin
8	chr11:15915400-15923000	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr11:15915400-15923600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr11:15915800-15928400	Weak transcription	Fetal Kidney	kidney
11	chr11:15916000-15922400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr11:15916000-15922600	Weak transcription	Fetal Heart	heart
13	chr11:15916000-15922600	Weak transcription	Ovary	ovary
14	chr11:15916200-15922400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr11:15917800-15923000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr11:15918400-15923000	Weak transcription	Fetal Muscle Trunk	muscle
17	chr11:15918400-15928000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr11:15919600-15922800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr11:15919600-15924800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr11:15919600-15924800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr11:15919800-15922800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr11:15919800-15925000	Weak transcription	Hela-S3	cervix
23	chr11:15919800-15934400	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr11:15920000-15922800	Weak transcription	Primary neutrophils fromperipheralblood	blood
25	chr11:15920000-15923200	Weak transcription	Primary monocytes fromperipheralblood	blood
26	chr11:15920200-15922400	Weak transcription	Osteobl	bone
27	chr11:15920200-15923000	Weak transcription	Spleen	Spleen
28	chr11:15920400-15923000	Weak transcription	Fetal Intestine Large	intestine
29	chr11:15920400-15923400	Weak transcription	Placenta Amnion	Placenta Amnion
30	chr11:15920800-15923000	Weak transcription	Skeletal Muscle Male	skeletal muscle
31	chr11:15920800-15925000	Weak transcription	Skeletal Muscle Female	skeletal muscle
32	chr11:15920800-15926400	Weak transcription	Psoas Muscle	Psoas
33	chr11:15921200-15923000	Weak transcription	Fetal Muscle Leg	muscle
34	chr11:15922200-15922400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr11:15922200-15924000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr11:15922200-15924000	Enhancers	Placenta	Placenta

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