Variant report

Variant	rs4459259
Chromosome Location	chr11:15868595-15868596
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:15866490..15868607-chr11:15869279..15871978,3	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10766286	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10832527	0.88[ASN][1000 genomes]
rs11023740	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11023745	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11023749	0.86[ASN][1000 genomes]
rs11023751	0.86[ASN][1000 genomes]
rs11604993	0.86[ASN][1000 genomes]
rs12576777	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12786929	0.82[ASN][1000 genomes]
rs1371909	0.86[ASN][1000 genomes]
rs1440709	0.81[AMR][1000 genomes]
rs1440718	0.86[ASN][1000 genomes]
rs1440719	0.86[ASN][1000 genomes]
rs1440720	0.86[ASN][1000 genomes]
rs1465893	0.82[ASN][1000 genomes]
rs1543832	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1866821	0.86[ASN][1000 genomes]
rs1920672	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2011772	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2083526	0.86[ASN][1000 genomes]
rs2119375	0.83[ASN][1000 genomes]
rs2218205	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2351392	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2593588	0.88[AMR][1000 genomes]
rs2615041	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs55842281	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56183020	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61878488	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7101476	0.92[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7106776	0.88[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs727324	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs874189	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs882148	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832073	chr11:15822409-15984078	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15865600-15872400	Weak transcription	Psoas Muscle	Psoas
2	chr11:15865600-15873000	Weak transcription	Right Atrium	heart
3	chr11:15866800-15877800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr11:15867000-15870400	Weak transcription	Fetal Lung	lung
5	chr11:15867000-15870800	Weak transcription	Left Ventricle	heart
6	chr11:15867000-15871800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr11:15867200-15869800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr11:15867200-15871600	Weak transcription	Fetal Muscle Leg	muscle
9	chr11:15867200-15872400	Weak transcription	Brain Angular Gyrus	brain
10	chr11:15867200-15873200	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr11:15867400-15872600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr11:15867600-15869400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr11:15867600-15870200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr11:15867600-15870400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr11:15867600-15872400	Weak transcription	Brain Germinal Matrix	brain
16	chr11:15867800-15868800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr11:15867800-15870600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr11:15867800-15870600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr11:15867800-15870600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr11:15867800-15870800	Weak transcription	Fetal Brain Male	brain
21	chr11:15868400-15868800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr11:15868400-15875000	Enhancers	Cortex derived primary cultured neurospheres	brain

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