Variant report

Variant	rs1465893
Chromosome Location	chr11:15863328-15863329
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1009460	0.84[ASN][1000 genomes]
rs10766286	0.81[ASN][1000 genomes]
rs10832522	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs10832523	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs11023740	0.82[ASN][1000 genomes]
rs11023745	0.81[ASN][1000 genomes]
rs12226568	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12272146	0.87[ASN][1000 genomes]
rs12576777	0.81[ASN][1000 genomes]
rs12786929	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12797447	0.89[EUR][1000 genomes]
rs12800617	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1348076	0.84[ASN][1000 genomes]
rs1440708	0.85[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.81[AMR][1000 genomes]
rs1440709	1.00[CHB][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];0.83[ASN][1000 genomes]
rs1543832	0.85[ASN][1000 genomes]
rs1882132	0.84[ASN][1000 genomes]
rs1920666	0.84[ASN][1000 genomes]
rs1920667	0.85[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap]
rs1920668	0.84[ASN][1000 genomes]
rs1920669	0.84[ASN][1000 genomes]
rs1920671	0.84[ASN][1000 genomes]
rs1920672	0.85[ASN][1000 genomes]
rs1960710	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2165355	0.84[ASN][1000 genomes]
rs2218205	0.81[ASN][1000 genomes]
rs2351392	0.81[ASN][1000 genomes]
rs2593588	0.84[ASN][1000 genomes]
rs2593589	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2593590	0.84[ASN][1000 genomes]
rs2615041	0.85[ASN][1000 genomes]
rs2615042	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs4459259	0.82[ASN][1000 genomes]
rs7101476	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7106776	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs727324	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832073	chr11:15822409-15984078	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1465893	FAR1	cis	parietal	SCAN

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15853000-15866600	Weak transcription	Left Ventricle	heart
2	chr11:15854200-15866600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr11:15858000-15865000	Weak transcription	Fetal Muscle Trunk	muscle
4	chr11:15858800-15865200	Weak transcription	Psoas Muscle	Psoas
5	chr11:15860800-15868000	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr11:15861000-15864800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr11:15861400-15863400	Weak transcription	Brain Germinal Matrix	brain
8	chr11:15861400-15864400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr11:15862200-15864600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr11:15862200-15864800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr11:15862200-15865200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr11:15862200-15865400	Weak transcription	Brain Angular Gyrus	brain
13	chr11:15862600-15863400	Enhancers	Duodenum Mucosa	Duodenum
14	chr11:15862600-15863400	Enhancers	Fetal Intestine Large	intestine
15	chr11:15862600-15866000	Enhancers	Fetal Muscle Leg	muscle
16	chr11:15862800-15863600	Enhancers	Rectal Mucosa Donor 31	rectum
17	chr11:15862800-15864000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr11:15862800-15864200	Enhancers	Fetal Intestine Small	intestine
19	chr11:15862800-15866400	Enhancers	Fetal Lung	lung
20	chr11:15862800-15866800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr11:15863000-15863400	Weak transcription	Fetal Brain Male	brain
22	chr11:15863000-15864000	Enhancers	NHEK	skin
23	chr11:15863000-15864200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr11:15863000-15868400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr11:15863200-15863600	Enhancers	Duodenum Smooth Muscle	Duodenum
26	chr11:15863200-15863600	Enhancers	Small Intestine	intestine
27	chr11:15863200-15864200	Weak transcription	H1 Cell Line	embryonic stem cell
28	chr11:15863200-15864600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
29	chr11:15863200-15867200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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