Variant report

Variant	rs2593588
Chromosome Location	chr11:15852100-15852101
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:15850004..15852475-chr11:15853196..15856629,3	K562	blood:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs1009460	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10766286	0.83[AMR][1000 genomes]
rs10832522	0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10832523	0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11023740	0.88[AMR][1000 genomes]
rs11023745	0.84[AMR][1000 genomes]
rs12226568	0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12272146	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12576777	0.84[AMR][1000 genomes]
rs12786929	0.84[ASN][1000 genomes]
rs12800617	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1348076	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1440708	0.83[CEU][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1440709	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1465893	0.84[ASN][1000 genomes]
rs1543832	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1837605	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1882129	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1882130	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1882132	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1920666	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1920667	0.83[CEU][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1920668	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1920669	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1920670	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1920671	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1920672	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1960710	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2011772	0.81[AMR][1000 genomes]
rs2165355	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2218205	0.83[AMR][1000 genomes]
rs2351392	0.83[AMR][1000 genomes]
rs2593589	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2593590	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2615041	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2615042	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2615043	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4459259	0.88[AMR][1000 genomes]
rs55842281	0.80[AMR][1000 genomes]
rs56183020	0.81[AMR][1000 genomes]
rs61878488	0.87[AMR][1000 genomes]
rs7101476	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7106776	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs727324	0.88[AMR][1000 genomes]
rs874189	0.81[AMR][1000 genomes]
rs882148	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832073	chr11:15822409-15984078	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15847400-15852200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr11:15847400-15853800	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr11:15848000-15852800	Enhancers	Brain Hippocampus Middle	brain
4	chr11:15848000-15853400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr11:15848400-15852400	Weak transcription	NH-A	brain
6	chr11:15848400-15853000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr11:15848600-15852600	Enhancers	Fetal Lung	lung
8	chr11:15848800-15857600	Weak transcription	Fetal Muscle Trunk	muscle
9	chr11:15849000-15852200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr11:15849000-15852600	Enhancers	Brain Anterior Caudate	brain
11	chr11:15849400-15852400	Weak transcription	Adipose Nuclei	Adipose
12	chr11:15850200-15853400	Enhancers	HUVEC	blood vessel
13	chr11:15850600-15852200	Weak transcription	Brain Germinal Matrix	brain
14	chr11:15850600-15852400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr11:15850600-15852400	Weak transcription	Right Atrium	heart
16	chr11:15850600-15857000	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr11:15850600-15860600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr11:15851200-15857200	Weak transcription	Psoas Muscle	Psoas
19	chr11:15851400-15852400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr11:15851800-15852800	Enhancers	Brain Inferior Temporal Lobe	brain
21	chr11:15852000-15852200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
22	chr11:15852000-15852200	Enhancers	Brain Substantia Nigra	brain
23	chr11:15852000-15852600	Enhancers	Brain Cingulate Gyrus	brain
24	chr11:15852000-15852800	Enhancers	Brain Angular Gyrus	brain
25	chr11:15852000-15852800	Enhancers	Fetal Stomach	stomach
26	chr11:15852000-15853000	Enhancers	Fetal Muscle Leg	muscle
27	chr11:15852000-15853000	Enhancers	Left Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links