Variant report

Variant	rs2351392
Chromosome Location	chr11:15878619-15878620
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10766286	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10832527	0.89[ASN][1000 genomes]
rs11023740	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11023745	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11023749	0.87[ASN][1000 genomes]
rs11023751	0.87[ASN][1000 genomes]
rs11023754	0.88[CEU][hapmap];0.81[CHB][hapmap];0.81[JPT][hapmap]
rs11604993	0.87[ASN][1000 genomes]
rs12576777	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12786929	0.81[ASN][1000 genomes]
rs1371909	0.87[ASN][1000 genomes]
rs1440708	0.94[JPT][hapmap]
rs1440709	0.94[JPT][hapmap]
rs1440718	0.87[ASN][1000 genomes]
rs1440719	0.87[ASN][1000 genomes]
rs1440720	0.87[ASN][1000 genomes]
rs1465893	0.81[ASN][1000 genomes]
rs1543832	0.83[AMR][1000 genomes]
rs1866821	0.87[ASN][1000 genomes]
rs1920667	0.94[JPT][hapmap]
rs1920672	0.81[AMR][1000 genomes]
rs2011772	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2083526	0.87[ASN][1000 genomes]
rs2119375	0.84[ASN][1000 genomes]
rs2218205	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2593588	0.83[AMR][1000 genomes]
rs2615041	0.83[AMR][1000 genomes]
rs2615042	0.94[JPT][hapmap]
rs4459259	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs55842281	0.95[AMR][1000 genomes];0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56183020	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61878488	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7101476	0.88[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7106776	0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs727324	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs874189	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs882148	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832073	chr11:15822409-15984078	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15873400-15882800	Weak transcription	Right Atrium	heart
2	chr11:15875000-15880000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr11:15877200-15885200	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr11:15878600-15879200	Enhancers	Lung	lung

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