Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10766289	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10832525	0.89[EUR][1000 genomes]
rs10832526	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11023747	0.83[EUR][1000 genomes]
rs11023753	0.95[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs11023754	0.83[MEX][hapmap]
rs11023757	0.80[EUR][1000 genomes]
rs12289250	0.80[EUR][1000 genomes]
rs12290232	0.81[EUR][1000 genomes]
rs12364139	0.95[CEU][hapmap];0.95[JPT][hapmap];0.83[TSI][hapmap];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1440707	0.95[CEU][hapmap];0.95[JPT][hapmap];0.80[TSI][hapmap];0.82[ASN][1000 genomes]
rs1440708	0.91[MEX][hapmap]
rs1440709	0.84[MEX][hapmap]
rs1920667	0.83[MEX][hapmap]
rs2119376	0.81[EUR][1000 genomes]
rs4756835	0.82[ASN][1000 genomes]
rs4756836	0.82[ASN][1000 genomes]
rs4757370	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4757371	0.95[CEU][hapmap];0.95[JPT][hapmap];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4757373	0.95[CEU][hapmap];0.95[JPT][hapmap];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4757374	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4757375	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832073	chr11:15822409-15984078	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15873400-15882800	Weak transcription	Right Atrium	heart
2	chr11:15877200-15885200	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr11:15880600-15885000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr11:15881200-15886600	Enhancers	Fetal Heart	heart

Quick Search: