Variant report

Variant	rs4756836
Chromosome Location	chr11:15895424-15895425
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:15888777..15891092-chr11:15894580..15897379,2	K562	blood:
2	chr11:15884047..15885599-chr11:15894143..15896030,2	K562	blood:

Extended variants
information (count: 31 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10766289	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10766290	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10832526	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11023753	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11023757	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11023763	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11023766	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12270494	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12270765	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12287547	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12289250	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12290232	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12364139	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1440705	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1440707	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1866820	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2002372	0.82[ASN][1000 genomes]
rs2119376	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2218204	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2582309	0.83[AMR][1000 genomes]
rs4756835	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4756837	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4757370	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4757371	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4757373	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4757374	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4757375	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7106197	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7481566	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs982988	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832073	chr11:15822409-15984078	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4756836	DKK3	cis	cerebellum	SCAN

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15890400-15897000	Weak transcription	Fetal Intestine Small	intestine
2	chr11:15893000-15896000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr11:15893200-15895800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr11:15893600-15914000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr11:15894000-15895800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr11:15894000-15897000	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr11:15894000-15897600	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr11:15894200-15897800	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr11:15894400-15897000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr11:15894400-15897600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr11:15894600-15897200	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr11:15894800-15897200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr11:15895400-15897800	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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