Variant report

Variant	rs4757370
Chromosome Location	chr11:15885136-15885137
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:15852315..15854406-chr11:15883886..15886816,2	K562	blood:
2	chr11:15884047..15885599-chr11:15894143..15896030,2	K562	blood:
3	chr11:15881637..15884616-chr11:15884653..15886949,2	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10766289	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10766290	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10832525	0.85[EUR][1000 genomes]
rs10832526	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11023742	0.84[AFR][1000 genomes]
rs11023753	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11023757	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11023763	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11023766	0.91[ASN][1000 genomes]
rs12270494	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12270765	0.91[ASN][1000 genomes]
rs12280342	0.85[AFR][1000 genomes]
rs12287547	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12289250	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12290232	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12364139	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1440705	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1440707	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1866820	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2002372	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2119376	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2218204	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4756833	0.85[AFR][1000 genomes]
rs4756835	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4756836	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4756837	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4757371	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4757373	0.95[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4757374	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4757375	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7106197	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7481566	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs982988	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832073	chr11:15822409-15984078	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15877200-15885200	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr11:15881200-15886600	Enhancers	Fetal Heart	heart
3	chr11:15883400-15887800	Weak transcription	Right Atrium	heart
4	chr11:15884600-15885600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr11:15884600-15887600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr11:15884800-15885200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr11:15884800-15885400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr11:15884800-15885600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr11:15885000-15885200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr11:15885000-15885200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr11:15885000-15886000	Enhancers	H9 Cell Line	embryonic stem cell
12	chr11:15885000-15886000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr11:15885000-15886400	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr11:15885000-15887800	Enhancers	Hela-S3	cervix

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