Variant report

Variant	rs4756833
Chromosome Location	chr11:15879426-15879427
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10766285	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10832524	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10832525	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11023742	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11023747	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11023753	0.91[CEU][hapmap];0.86[JPT][hapmap]
rs11023754	0.83[CEU][hapmap]
rs11023757	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs12270494	0.80[AFR][1000 genomes]
rs12280342	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12289250	0.85[AFR][1000 genomes]
rs12290232	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs12364139	0.86[CEU][hapmap];0.90[JPT][hapmap]
rs12797447	0.83[AMR][1000 genomes]
rs1440707	0.86[CEU][hapmap];0.90[JPT][hapmap]
rs2119376	0.89[AFR][1000 genomes]
rs4757370	0.85[AFR][1000 genomes]
rs4757371	0.87[CEU][hapmap];0.86[JPT][hapmap]
rs4757373	0.86[CEU][hapmap];0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832073	chr11:15822409-15984078	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15873400-15882800	Weak transcription	Right Atrium	heart
2	chr11:15875000-15880000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr11:15877200-15885200	Weak transcription	Cortex derived primary cultured neurospheres	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links