Variant report

Variant	rs11023747
Chromosome Location	chr11:15879877-15879878
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10766285	1.00[ASN][1000 genomes]
rs10766289	0.83[EUR][1000 genomes]
rs10832524	0.96[ASN][1000 genomes]
rs10832525	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10832526	0.83[EUR][1000 genomes]
rs11023742	0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11023753	1.00[CEU][hapmap];0.90[JPT][hapmap];0.82[EUR][1000 genomes]
rs12280342	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12364139	1.00[CEU][hapmap];0.82[CHD][hapmap];0.85[GIH][hapmap];0.90[JPT][hapmap];0.87[MEX][hapmap];0.83[TSI][hapmap];0.85[EUR][1000 genomes]
rs1440707	1.00[CEU][hapmap];0.82[CHD][hapmap];0.83[GIH][hapmap];0.90[JPT][hapmap];0.87[MEX][hapmap];0.80[TSI][hapmap];0.82[EUR][1000 genomes]
rs2002372	0.83[EUR][1000 genomes]
rs4756833	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4757371	1.00[CEU][hapmap];0.90[JPT][hapmap];0.85[EUR][1000 genomes]
rs4757373	1.00[CEU][hapmap];0.90[JPT][hapmap];0.85[EUR][1000 genomes]
rs4757374	0.85[EUR][1000 genomes]
rs4757375	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832073	chr11:15822409-15984078	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15873400-15882800	Weak transcription	Right Atrium	heart
2	chr11:15875000-15880000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr11:15877200-15885200	Weak transcription	Cortex derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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