Variant report

Variant	rs11024928
Chromosome Location	chr11:19006233-19006234
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10160370	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11024921	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11024923	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11024927	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11024929	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11024931	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11024932	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11820137	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12272477	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12274432	1.00[AMR][1000 genomes]
rs12277807	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12283387	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12285022	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12285066	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12285507	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58173009	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7103610	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7123386	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv553633	chr11:18311701-19058451	Weak transcription Strong transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
2	esv2758257	chr11:18818729-19082068	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	esv2759806	chr11:18818729-19082068	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv428250	chr11:18818729-19082068	Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv832082	chr11:18889979-19047994	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:18995800-19008600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links