Variant report

Variant	rs11820137
Chromosome Location	chr11:19049248-19049249
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10160370	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs11024921	1.00[AMR][1000 genomes]
rs11024923	1.00[AMR][1000 genomes]
rs11024927	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11024928	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11024929	1.00[AMR][1000 genomes]
rs11024931	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11024932	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12272477	1.00[AMR][1000 genomes]
rs12274432	1.00[AMR][1000 genomes]
rs12277807	1.00[AMR][1000 genomes]
rs12283387	1.00[AMR][1000 genomes]
rs12285022	1.00[AMR][1000 genomes]
rs12285066	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs12285507	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58173009	1.00[AMR][1000 genomes]
rs7103610	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs7123386	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv553633	chr11:18311701-19058451	Weak transcription Strong transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
2	esv2758257	chr11:18818729-19082068	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	esv2759806	chr11:18818729-19082068	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv428250	chr11:18818729-19082068	Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv1040805	chr11:19037871-19892803	Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
6	nsv540957	chr11:19037871-19892803	Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
7	nsv870101	chr11:19037931-19093952	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:19046600-19050600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr11:19047200-19050000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr11:19048000-19049400	Weak transcription	HUVEC	blood vessel
4	chr11:19048400-19049800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr11:19048400-19050800	Enhancers	NHEK	skin
6	chr11:19048600-19049600	Weak transcription	Stomach Mucosa	stomach
7	chr11:19048600-19050600	Enhancers	HMEC	breast
8	chr11:19048800-19049600	Weak transcription	NHDF-Ad	bronchial
9	chr11:19048800-19050000	Enhancers	NH-A	brain
10	chr11:19048800-19050600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr11:19048800-19050600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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