Variant report
| Variant | rs7103610 |
|---|---|
| Chromosome Location | chr11:18995884-18995885 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:11)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:11 , 50 per page) page:
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| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | RAD21 | chr11:18995778-18996096 | H1-hESC | embryonic stem cell: | n/a | n/a |
| 2 | TEAD4 | chr11:18995685-18996101 | H1-hESC | embryonic stem cell: | n/a | n/a |
| 3 | SP1 | chr11:18995797-18996079 | H1-hESC | embryonic stem cell: | n/a | n/a |
| 4 | CTCF | chr11:18995788-18996005 | H1-hESC | embryonic stem cell: | n/a | chr11:18995958-18995967 |
| 5 | RAD21 | chr11:18995833-18996075 | H1-hESC | embryonic stem cell: | n/a | n/a |
| 6 | YY1 | chr11:18995779-18996051 | H1-hESC | embryonic stem cell: | n/a | chr11:18995842-18995858 |
| 7 | MAX | chr11:18995786-18996131 | H1-hESC | embryonic stem cell: | n/a | n/a |
| 8 | RAD21 | chr11:18995668-18996119 | H1-hESC | embryonic stem cell: | n/a | n/a |
| 9 | MAX | chr11:18995818-18996042 | H1-hESC | embryonic stem cell: | n/a | n/a |
| 10 | CTCF | chr11:18995880-18996030 | Caco-2 | colon: | n/a | chr11:18995958-18995967 |
| 11 | TEAD4 | chr11:18995774-18996195 | H1-hESC | embryonic stem cell: | n/a | n/a |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000254720 | TF binding region |
rSNPs within LD-proxies of this variant (count:18)
| rs_ID | r2[population] |
|---|---|
| rs10160370 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11024921 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11024923 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11024927 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11024928 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11024929 | 1.00[AMR][1000 genomes] |
| rs11024931 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11024932 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11820137 | 1.00[AMR][1000 genomes] |
| rs12272477 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12274432 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12277807 | 0.80[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12283387 | 0.80[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12285022 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12285066 | 1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12285507 | 1.00[AMR][1000 genomes] |
| rs58173009 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7123386 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv553633 | chr11:18311701-19058451 | Weak transcription Strong transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 144 gene(s) | inside rSNPs | diseases |
| 2 | esv2758257 | chr11:18818729-19082068 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
| 3 | esv2759806 | chr11:18818729-19082068 | Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
| 4 | nsv428250 | chr11:18818729-19082068 | Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
| 5 | nsv832082 | chr11:18889979-19047994 | Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| 6 | esv12303 | chr11:18925223-18999313 | Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 7 | esv1793084 | chr11:18937433-18996477 | Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:18995800-18996000 | Enhancers | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
| 2 | chr11:18995800-18996200 | Enhancers | HUES64 Cell Line | embryonic stem cell |
| 3 | chr11:18995800-19008600 | Weak transcription | ES-WA7 Cell Line | embryonic stem cell |
