Variant report

Variant	rs11029414
Chromosome Location	chr11:26258481-26258482
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1037898	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10834929	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10834932	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10834933	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11029421	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11029431	0.83[EUR][1000 genomes]
rs11822090	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12224061	0.89[EUR][1000 genomes]
rs1461398	0.83[EUR][1000 genomes]
rs1461399	0.83[EUR][1000 genomes]
rs1903457	0.83[EUR][1000 genomes]
rs1903458	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2045702	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34561935	0.83[EUR][1000 genomes]
rs7101838	0.89[EUR][1000 genomes]
rs71480117	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs9332433	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832094	chr11:26130733-26292782	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv3371500	chr11:26257976-26261674	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26251800-26259200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr11:26256600-26265200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr11:26256800-26265000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links