Variant report

Variant	rs71480117
Chromosome Location	chr11:26258095-26258096
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 94 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:92)

rs_ID	r²[population]
rs1037898	0.82[AMR][1000 genomes]
rs10501041	0.80[AMR][1000 genomes]
rs10834929	0.80[AMR][1000 genomes]
rs11029414	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs11601216	0.80[AMR][1000 genomes]
rs11602913	0.80[AMR][1000 genomes]
rs11603054	0.80[AMR][1000 genomes]
rs11605240	0.80[AMR][1000 genomes]
rs11607541	0.80[AMR][1000 genomes]
rs11822090	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12785883	0.80[AMR][1000 genomes]
rs12791123	0.80[AMR][1000 genomes]
rs12791748	0.80[AMR][1000 genomes]
rs12791764	0.80[AMR][1000 genomes]
rs12796496	0.80[AMR][1000 genomes]
rs12797146	0.80[AMR][1000 genomes]
rs12799187	0.80[AMR][1000 genomes]
rs12799220	0.80[AMR][1000 genomes]
rs12799440	0.80[AMR][1000 genomes]
rs12799694	0.80[AMR][1000 genomes]
rs12800986	0.80[AMR][1000 genomes]
rs12801417	0.80[AMR][1000 genomes]
rs12801763	0.80[AMR][1000 genomes]
rs12802308	0.80[AMR][1000 genomes]
rs12803909	0.80[AMR][1000 genomes]
rs12806221	0.80[AMR][1000 genomes]
rs1318825	0.80[AMR][1000 genomes]
rs1318826	0.80[AMR][1000 genomes]
rs1381179	0.80[AMR][1000 genomes]
rs1381180	0.80[AMR][1000 genomes]
rs1578894	0.80[AMR][1000 genomes]
rs17243126	0.80[AMR][1000 genomes]
rs17243196	0.84[ASN][1000 genomes]
rs17308852	0.80[AMR][1000 genomes]
rs17308859	0.80[AMR][1000 genomes]
rs17308866	0.80[AMR][1000 genomes]
rs17308929	0.80[EUR][1000 genomes]
rs34249232	0.80[AMR][1000 genomes]
rs34634213	0.80[AMR][1000 genomes]
rs34713660	0.80[AMR][1000 genomes]
rs34767513	0.80[AMR][1000 genomes]
rs34817561	0.80[AMR][1000 genomes]
rs34879862	0.80[AMR][1000 genomes]
rs34988725	0.80[AMR][1000 genomes]
rs35055734	0.80[AMR][1000 genomes]
rs35077459	0.80[AMR][1000 genomes]
rs35093706	0.80[AMR][1000 genomes]
rs35235023	0.80[AMR][1000 genomes]
rs35258770	0.80[AMR][1000 genomes]
rs35567246	0.80[AMR][1000 genomes]
rs35719059	0.80[AMR][1000 genomes]
rs35746409	0.80[AMR][1000 genomes]
rs35766300	0.80[AMR][1000 genomes]
rs35926520	0.80[AMR][1000 genomes]
rs35970758	0.80[AMR][1000 genomes]
rs4300356	0.80[AMR][1000 genomes]
rs4313531	0.80[AMR][1000 genomes]
rs4313532	0.80[AMR][1000 genomes]
rs4390306	0.81[AMR][1000 genomes]
rs4424637	0.80[AMR][1000 genomes]
rs4498946	0.80[AMR][1000 genomes]
rs4542363	0.80[AMR][1000 genomes]
rs4620676	0.80[AMR][1000 genomes]
rs4623853	0.80[AMR][1000 genomes]
rs59723314	0.80[AMR][1000 genomes]
rs61448692	0.80[AMR][1000 genomes]
rs66510770	0.80[AMR][1000 genomes]
rs66873040	0.80[AMR][1000 genomes]
rs66965677	0.80[AMR][1000 genomes]
rs67029124	0.80[AMR][1000 genomes]
rs67184583	0.80[AMR][1000 genomes]
rs67223308	0.80[AMR][1000 genomes]
rs67321699	0.80[AMR][1000 genomes]
rs67691143	0.80[AMR][1000 genomes]
rs67800780	0.80[AMR][1000 genomes]
rs67805620	0.80[AMR][1000 genomes]
rs67844042	0.80[AMR][1000 genomes]
rs7116694	0.80[AMR][1000 genomes]
rs7116714	0.80[AMR][1000 genomes]
rs71480110	0.80[AMR][1000 genomes]
rs71480112	0.80[AMR][1000 genomes]
rs72872711	0.80[AMR][1000 genomes]
rs72872712	0.80[AMR][1000 genomes]
rs72872714	0.80[AMR][1000 genomes]
rs72889674	0.80[AMR][1000 genomes]
rs72889675	0.80[AMR][1000 genomes]
rs7939607	0.80[AMR][1000 genomes]
rs7951500	0.80[AMR][1000 genomes]
rs7952023	0.80[AMR][1000 genomes]
rs7952050	0.80[AMR][1000 genomes]
rs972169	0.80[AMR][1000 genomes]
rs972170	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832094	chr11:26130733-26292782	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv3371500	chr11:26257976-26261674	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26251800-26259200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr11:26256600-26265200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr11:26256800-26265000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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