Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10834929	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10834932	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10834933	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11029414	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11029421	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11029431	0.83[EUR][1000 genomes]
rs11600572	0.97[ASN][1000 genomes]
rs11822090	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12224061	0.84[EUR][1000 genomes]
rs12806338	0.95[ASN][1000 genomes]
rs1461397	0.93[ASN][1000 genomes]
rs1461398	0.83[EUR][1000 genomes]
rs1461399	0.83[EUR][1000 genomes]
rs1461400	0.93[ASN][1000 genomes]
rs1903458	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2045702	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2350205	1.00[ASN][1000 genomes]
rs34561935	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7101838	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs71480117	0.82[AMR][1000 genomes]
rs9332433	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832094	chr11:26130733-26292782	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26256600-26265200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr11:26256800-26265000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

Quick Search: