Variant report

Variant	rs11600572
Chromosome Location	chr11:26272588-26272589
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1037898	0.97[ASN][1000 genomes]
rs11602100	0.84[GIH][hapmap];0.84[MEX][hapmap];0.81[MKK][hapmap]
rs11822090	0.97[ASN][1000 genomes]
rs12806338	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1461397	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1461400	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17243259	0.80[CEU][hapmap]
rs2045702	1.00[ASN][1000 genomes]
rs2350205	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34561935	0.97[ASN][1000 genomes]
rs7121193	0.80[CEU][hapmap];0.84[JPT][hapmap]
rs9332433	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832094	chr11:26130733-26292782	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11600572	ENTHD1	trans	cerebellum	SCAN

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26267200-26275200	Weak transcription	NHLF	lung
2	chr11:26268400-26274600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr11:26270600-26273000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr11:26272200-26272800	Enhancers	NHDF-Ad	bronchial
5	chr11:26272400-26274000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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