Variant report
| Variant | rs11029669 |
|---|---|
| Chromosome Location | chr11:26695743-26695744 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr11:26695454..26697214-chr11:26724438..26726286,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:34)
| rs_ID | r2[population] |
|---|---|
| rs12793784 | 0.82[CEU][hapmap] |
| rs12807548 | 1.00[JPT][hapmap] |
| rs1690067 | 1.00[JPT][hapmap];0.92[ASN][1000 genomes] |
| rs172415 | 1.00[JPT][hapmap];0.92[ASN][1000 genomes] |
| rs17309300 | 1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs188389 | 1.00[JPT][hapmap];0.92[ASN][1000 genomes] |
| rs293929 | 0.96[ASN][1000 genomes] |
| rs293932 | 1.00[JPT][hapmap];0.96[ASN][1000 genomes] |
| rs293934 | 1.00[JPT][hapmap];0.96[ASN][1000 genomes] |
| rs293955 | 1.00[JPT][hapmap];0.92[ASN][1000 genomes] |
| rs293962 | 0.92[ASN][1000 genomes] |
| rs293987 | 0.92[ASN][1000 genomes] |
| rs293988 | 0.92[ASN][1000 genomes] |
| rs293990 | 0.92[ASN][1000 genomes] |
| rs293991 | 0.92[ASN][1000 genomes] |
| rs293993 | 1.00[JPT][hapmap];0.92[ASN][1000 genomes] |
| rs293994 | 0.92[ASN][1000 genomes] |
| rs293996 | 0.92[ASN][1000 genomes] |
| rs293997 | 0.92[ASN][1000 genomes] |
| rs293998 | 1.00[JPT][hapmap];0.92[ASN][1000 genomes] |
| rs294005 | 0.96[ASN][1000 genomes] |
| rs34485299 | 1.00[ASN][1000 genomes] |
| rs34651170 | 0.85[ASN][1000 genomes] |
| rs35495998 | 0.96[ASN][1000 genomes] |
| rs35767722 | 1.00[ASN][1000 genomes] |
| rs375928 | 1.00[JPT][hapmap];0.92[ASN][1000 genomes] |
| rs3802753 | 0.86[JPT][hapmap] |
| rs381229 | 1.00[JPT][hapmap];0.88[ASN][1000 genomes] |
| rs397431 | 0.96[ASN][1000 genomes] |
| rs439961 | 1.00[JPT][hapmap];0.96[ASN][1000 genomes] |
| rs441404 | 0.92[ASN][1000 genomes] |
| rs7114361 | 0.89[JPT][hapmap] |
| rs71480140 | 1.00[ASN][1000 genomes] |
| rs9737397 | 0.89[JPT][hapmap] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1044544 | chr11:26506962-26967285 | Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv916187 | chr11:26576875-27328603 | Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 15 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:26688600-26702400 | Weak transcription | Fetal Intestine Small | intestine |
| 2 | chr11:26695200-26701800 | Weak transcription | Fetal Intestine Large | intestine |
