Variant report

Variant	rs17309300
Chromosome Location	chr11:26684142-26684143
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:26682812..26684520-chr11:26686071..26688334,2	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11029669	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12807548	0.89[CEU][hapmap];1.00[JPT][hapmap]
rs1690067	0.89[CEU][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs172415	0.89[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.92[ASN][1000 genomes]
rs188389	0.85[CEU][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs293929	0.96[ASN][1000 genomes]
rs293932	0.89[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.96[ASN][1000 genomes]
rs293934	0.89[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.96[ASN][1000 genomes]
rs293955	0.88[CEU][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs293962	0.92[ASN][1000 genomes]
rs293987	0.92[ASN][1000 genomes]
rs293988	0.92[ASN][1000 genomes]
rs293990	0.92[ASN][1000 genomes]
rs293991	0.92[ASN][1000 genomes]
rs293993	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs293994	0.92[ASN][1000 genomes]
rs293996	0.92[ASN][1000 genomes]
rs293997	0.92[ASN][1000 genomes]
rs293998	0.85[CEU][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs294005	0.96[ASN][1000 genomes]
rs34485299	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34651170	0.85[ASN][1000 genomes]
rs35495998	0.96[ASN][1000 genomes]
rs35767722	1.00[ASN][1000 genomes]
rs375928	0.88[CEU][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs3802753	0.86[JPT][hapmap]
rs381229	0.89[CEU][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs397431	0.96[ASN][1000 genomes]
rs4354649	1.00[GIH][hapmap];0.94[TSI][hapmap]
rs439961	0.89[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.96[ASN][1000 genomes]
rs441404	0.92[ASN][1000 genomes]
rs7114361	0.88[JPT][hapmap]
rs71480140	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9737397	0.88[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044544	chr11:26506962-26967285	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv916187	chr11:26576875-27328603	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26683200-26685400	Enhancers	Fetal Heart	heart

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