Variant report

Variant	rs4354649
Chromosome Location	chr11:26670850-26670851
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12807548	0.89[CEU][hapmap];0.83[YRI][hapmap]
rs1690067	0.89[CEU][hapmap]
rs172415	0.89[CEU][hapmap];1.00[GIH][hapmap];0.94[TSI][hapmap]
rs17309300	1.00[GIH][hapmap];0.94[TSI][hapmap]
rs188389	0.85[CEU][hapmap]
rs293932	0.89[CEU][hapmap];1.00[GIH][hapmap];0.94[TSI][hapmap]
rs293934	1.00[CEU][hapmap];1.00[GIH][hapmap];0.94[TSI][hapmap]
rs293955	0.88[CEU][hapmap]
rs293998	0.85[CEU][hapmap]
rs375928	0.88[CEU][hapmap]
rs3802753	0.83[YRI][hapmap]
rs381229	0.89[CEU][hapmap]
rs439961	0.89[CEU][hapmap];1.00[GIH][hapmap];0.94[TSI][hapmap]
rs7114361	0.83[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044544	chr11:26506962-26967285	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv1050121	chr11:26532655-26675303	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv540974	chr11:26532655-26675303	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv916187	chr11:26576875-27328603	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	nsv553907	chr11:26654581-26670850	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv897141	chr11:26659406-26674033	Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv467779	chr11:26661690-26674033	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv553908	chr11:26661690-26674033	Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26645200-26671600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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