Variant report

Variant	rs11032383
Chromosome Location	chr11:33802300-33802301
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10742306	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.98[TSI][hapmap];0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10768028	0.83[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10768029	0.92[ASN][1000 genomes]
rs10836110	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs11032389	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11032397	0.89[CHB][hapmap];0.84[ASN][1000 genomes]
rs12223394	0.85[CHB][hapmap]
rs12807373	0.92[ASN][1000 genomes]
rs1522084	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs3817442	1.00[CEU][hapmap];0.98[GIH][hapmap];1.00[TSI][hapmap];0.99[EUR][1000 genomes]
rs4756002	1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs7107237	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7937643	0.92[ASN][1000 genomes]
rs884710	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs953142	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs999479	1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs11032383	IMMP1L	cis	cerebellum	SCAN
rs11032383	CAPRIN1	cis	cerebellum	SCAN

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:33799600-33802400	Enhancers	NHLF	lung
2	chr11:33799800-33802400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr11:33799800-33802400	Enhancers	HSMM	muscle
4	chr11:33799800-33802800	Enhancers	Left Ventricle	heart
5	chr11:33800000-33802400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr11:33800000-33802400	Enhancers	Muscle Satellite Cultured Cells	--
7	chr11:33800600-33802400	Enhancers	Fetal Muscle Leg	muscle
8	chr11:33801200-33802400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr11:33801400-33802400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr11:33801800-33802600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr11:33801800-33802600	Weak transcription	Aorta	Aorta
12	chr11:33801800-33802800	Enhancers	HSMMtube	muscle
13	chr11:33802000-33802400	Enhancers	NH-A	brain
14	chr11:33802000-33802400	Enhancers	Osteobl	bone
15	chr11:33802200-33802600	Enhancers	Fetal Heart	heart
16	chr11:33802200-33818200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links